PDB entry 7n0i

View 7n0i on RCSB PDB site
Description: Structure of the SARS-CoV-2 N protein C-terminal domain bound to single-domain antibody E2
Class: viral protein/immune system
Keywords: SARS-CoV-2, nanobody, nucleocapsid, VIRUS, VIRAL PROTEIN-IMMUNE SYSTEM complex
Deposited on 2021-05-25, released 2021-06-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-06-09, with a file datestamp of 2021-06-04.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: nucleoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7n0ia_
  • Chain 'B':
    Compound: nucleoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7n0ib_
  • Chain 'C':
    Compound: nucleoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7n0ic_
  • Chain 'D':
    Compound: nucleoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7n0id_
  • Chain 'E':
    Compound: nucleoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7n0ie_
  • Chain 'F':
    Compound: nucleoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7n0if_
  • Chain 'G':
    Compound: nucleoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7n0ig_
  • Chain 'H':
    Compound: nucleoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7n0ih_
  • Chain 'I':
    Compound: Single-domain antibody E2
    Species: Lama glama [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 7N0I
    Domains in SCOPe 2.08: d7n0ii1, d7n0ii2
  • Chain 'J':
    Compound: Single-domain antibody E2
    Species: Lama glama [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 7N0I
    Domains in SCOPe 2.08: d7n0ij1, d7n0ij2
  • Chain 'K':
    Compound: Single-domain antibody E2
    Species: Lama glama [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 7N0I (0-End)
    Domains in SCOPe 2.08: d7n0ik1, d7n0ik2
  • Chain 'L':
    Compound: Single-domain antibody E2
    Species: Lama glama [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 7N0I (0-End)
    Domains in SCOPe 2.08: d7n0il1, d7n0il2
  • Heterogens: ACT, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >7n0iA (A:)
    nvtqafgrrgpeqtqgnfgdqelirqgtdykhwpqiaqfapsasaffgmsrigmevtpsg
    twltytgaiklddkdpnfkdqvillnkhidayktfp
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >7n0iB (B:)
    nvtqafgrrgpeqtqgnfgdqelirqgtdykhwpqiaqfapsasaffgmsrigmevtpsg
    twltytgaiklddkdpnfkdqvillnkhidayktfp
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download)
    >7n0iC (C:)
    nvtqafgrrgpeqtqgnfgdqelirqgtdykhwpqiaqfapsasaffgmsrigmevtpsg
    twltytgaiklddkdpnfkdqvillnkhidayktfp
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >7n0iD (D:)
    nvtqafgrrgpeqtqgnfgdqelirqgtdykhwpqiaqfapsasaffgmsrigmevtpsg
    twltytgaiklddkdpnfkdqvillnkhidayktfp
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download)
    >7n0iE (E:)
    nvtqafgrrgpeqtqgnfgdqelirqgtdykhwpqiaqfapsasaffgmsrigmevtpsg
    twltytgaiklddkdpnfkdqvillnkhidayktfp
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download)
    >7n0iF (F:)
    nvtqafgrrgpeqtqgnfgdqelirqgtdykhwpqiaqfapsasaffgmsrigmevtpsg
    twltytgaiklddkdpnfkdqvillnkhidayktfp
    

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download)
    >7n0iG (G:)
    nvtqafgrrgpeqtqgnfgdqelirqgtdykhwpqiaqfapsasaffgmsrigmevtpsg
    twltytgaiklddkdpnfkdqvillnkhidayktfp
    

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download)
    >7n0iH (H:)
    nvtqafgrrgpeqtqgnfgdqelirqgtdykhwpqiaqfapsasaffgmsrigmevtpsg
    twltytgaiklddkdpnfkdqvillnkhidayktfp
    

  • Chain 'I':
    Sequence, based on SEQRES records: (download)
    >7n0iI (I:)
    maevqlqasggglvqaggslrlscaasgrtdstqhmawfrqapgkerefvtaiqwrgggt
    sytdsvkgrftisrdnakntvylemnslkpedtavyycatntrwtyfsptvpdrydywgq
    gtqvtvssaaalehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >7n0iI (I:)
    aevqlqasggglvqaggslrlscaasgrtdstqhmawfrqapgkerefvtaiqwrgggts
    ytdsvkgrftisrdnakntvylemnslkpedtavyycatntrwtyfsptvpdrydywgqg
    tqvtvssaaalehhhh
    

  • Chain 'J':
    Sequence, based on SEQRES records: (download)
    >7n0iJ (J:)
    maevqlqasggglvqaggslrlscaasgrtdstqhmawfrqapgkerefvtaiqwrgggt
    sytdsvkgrftisrdnakntvylemnslkpedtavyycatntrwtyfsptvpdrydywgq
    gtqvtvssaaalehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >7n0iJ (J:)
    aevqlqasggglvqaggslrlscaasgrtdstqhmawfrqapgkerefvtaiqwrgggts
    ytdsvkgrftisrdnakntvylemnslkpedtavyycatntrwtyfsptvpdrydywgqg
    tqvtvssaaalehhh
    

  • Chain 'K':
    Sequence, based on SEQRES records: (download)
    >7n0iK (K:)
    maevqlqasggglvqaggslrlscaasgrtdstqhmawfrqapgkerefvtaiqwrgggt
    sytdsvkgrftisrdnakntvylemnslkpedtavyycatntrwtyfsptvpdrydywgq
    gtqvtvssaaalehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >7n0iK (K:)
    maevqlqasggglvqaggslrlscaasgrtdstqhmawfrqapgkerefvtaiqwrgggt
    sytdsvkgrftisrdnakntvylemnslkpedtavyycatntrwtyfsptvpdrydywgq
    gtqvtvssaa
    

  • Chain 'L':
    Sequence, based on SEQRES records: (download)
    >7n0iL (L:)
    maevqlqasggglvqaggslrlscaasgrtdstqhmawfrqapgkerefvtaiqwrgggt
    sytdsvkgrftisrdnakntvylemnslkpedtavyycatntrwtyfsptvpdrydywgq
    gtqvtvssaaalehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >7n0iL (L:)
    maevqlqasggglvqaggslrlscaasgrtdstqhmawfrqapgkerefvtaiqwrgggt
    sytdsvkgrftisrdnakntvylemnslkpedtavyycatntrwtyfsptvpdrydywgq
    gtqvtvssaaa