PDB entry 7mmo

View 7mmo on RCSB PDB site
Description: LY-CoV1404 neutralizing antibody against SARS-CoV-2
Class: immune system/viral protein
Keywords: antibody neutralizing SARS-CoV-2, IMMUNE SYSTEM, IMMUNE SYSTEM-VIRAL PROTEIN complex
Deposited on 2021-04-30, released 2021-05-12
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-05-26, with a file datestamp of 2021-05-21.
Experiment type: XRAY
Resolution: 2.43 Å
R-factor: N/A
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: LY-CoV1404 Fab heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7MMO (0-End)
    Domains in SCOPe 2.08: d7mmoa1, d7mmoa2
  • Chain 'B':
    Compound: LY-CoV1404 Fab light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7MMO (Start-214)
    Domains in SCOPe 2.08: d7mmob1, d7mmob2
  • Chain 'C':
    Compound: Spike protein S1
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7mmoc_
  • Chain 'D':
    Compound: LY-CoV1404 Fab heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7MMO (0-End)
    Domains in SCOPe 2.08: d7mmod1, d7mmod2
  • Chain 'E':
    Compound: LY-CoV1404 Fab light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7MMO (Start-214)
    Domains in SCOPe 2.08: d7mmoe1, d7mmoe2
  • Chain 'F':
    Compound: Spike protein S1
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7mmof_
  • Heterogens: NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >7mmoA (A:)
    eitlkesgptlvkptqtltltctfsgfslsisgvgvgwlrqppgkalewlaliywdddkr
    yspslksrltiskdtsknqvvlkmtnidpvdtatyycahhsistifdhwgqgtlvtvssa
    stkgpsvfplapcsrstsestaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssg
    lyslssvvtvpssslgtktytcnvdhkpsntkvdkrvhhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >7mmoA (A:)
    eitlkesgptlvkptqtltltctfsgfslsisgvgvgwlrqppgkalewlaliywdddkr
    yspslksrltiskdtsknqvvlkmtnidpvdtatyycahhsistifdhwgqgtlvtvssa
    stkgpsvfplapctaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglyslssv
    vtvpssslgtktytcnvdhkpsntkvdkrvhh
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >7mmoB (B:)
    qsaltqpasvsgspgqsitisctatssdvgdynyvswyqqhpgkapklmifevsdrpsgi
    snrfsgsksgntasltisglqaedeadyycssyttssavfgggtkltvlgrtvaapsvfi
    fppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslss
    tltlskadyekhkvyacevtqgttsvtksfnrgec
    

    Sequence, based on observed residues (ATOM records): (download)
    >7mmoB (B:)
    saltqpasvsgspgqsitisctatssdvgdynyvswyqqhpgkapklmifevsdrpsgis
    nrfsgsksgntasltisglqaedeadyycssyttssavfgggtkltvlgrtvaapsvfif
    ppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsst
    ltlskadyekhkvyacevtqgttsvtksfnrgec
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >7mmoC (C:)
    fpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptkln
    dlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggn
    ynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpy
    rvvvlsfellhapatvcgphhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >7mmoC (C:)
    nlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcft
    nvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynyly
    rlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvvl
    sfellhapatvcgp
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >7mmoD (D:)
    eitlkesgptlvkptqtltltctfsgfslsisgvgvgwlrqppgkalewlaliywdddkr
    yspslksrltiskdtsknqvvlkmtnidpvdtatyycahhsistifdhwgqgtlvtvssa
    stkgpsvfplapcsrstsestaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssg
    lyslssvvtvpssslgtktytcnvdhkpsntkvdkrvhhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >7mmoD (D:)
    eitlkesgptlvkptqtltltctfsgfslsisgvgvgwlrqppgkalewlaliywdddkr
    yspslksrltiskdtsknqvvlkmtnidpvdtatyycahhsistifdhwgqgtlvtvssa
    stkgpsvfplapcstaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglyslss
    vvtvpsktytcnvdhkpsntkvdkrvhh
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >7mmoE (E:)
    qsaltqpasvsgspgqsitisctatssdvgdynyvswyqqhpgkapklmifevsdrpsgi
    snrfsgsksgntasltisglqaedeadyycssyttssavfgggtkltvlgrtvaapsvfi
    fppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslss
    tltlskadyekhkvyacevtqgttsvtksfnrgec
    

    Sequence, based on observed residues (ATOM records): (download)
    >7mmoE (E:)
    saltqpasvsgspgqsitisctatssdvgdynyvswyqqhpgkapklmifevsdrpsgis
    nrfsgsksgntasltisglqaedeadyycssyttssavfgggtkltvlgrtvaapsvfif
    ppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsst
    ltlskadyekhkvyacevtqgttsvtksfnrgec
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >7mmoF (F:)
    fpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptkln
    dlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggn
    ynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpy
    rvvvlsfellhapatvcgphhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >7mmoF (F:)
    nlcpfgevfnatrfasvyawnrkrisncvaasfstfkcygvspdlcftnvyadsfvirgd
    evrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpfe
    rdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvvlsfellha