PDB entry 7mf1

View 7mf1 on RCSB PDB site
Description: Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing antibody 47D1
Class: immune system/viral protein
Keywords: COVID-19, IMMUNE SYSTEM-VIRAL PROTEIN complex
Deposited on 2021-04-08, released 2021-05-12
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-05-26, with a file datestamp of 2021-05-21.
Experiment type: XRAY
Resolution: 2.09 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Spike protein S1
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7mf1a_
  • Chain 'H':
    Compound: 47D1 Fab heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7MF1 (0-229)
    Domains in SCOPe 2.08: d7mf1h_
  • Chain 'L':
    Compound: 47D1 Fab light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7MF1
    Domains in SCOPe 2.08: d7mf1l_
  • Heterogens: NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7mf1A (A:)
tnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcf
tnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynyl
yrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvv
lsfellhapatvcgpkksghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >7mf1A (A:)
nlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcft
nvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynyly
rlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvvl
sfellhapatvcgp

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >7mf1H (H:)
qvqlvqsgaevkkpgssvrvsckasggtfstypiswvrqapgqglewmggiipifgtaks
aqkfqgrvtitadeftstaymemsslrsedtamyycaregrrygsgwyistgyfdywgqg
tlvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtf
pavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepksc

    Sequence, based on observed residues (ATOM records): (download) 
    >7mf1H (H:)
qvqlvqsgaevkkpgssvrvsckasggtfstypiswvrqapgqglewmggiipifgtaks
aqkfqgrvtitadeftstaymemsslrsedtamyycaregrrygsgwyistgyfdywgqg
tlvtvssastkgpsvfplapsgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqs
sglyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepksc

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >7mf1L (L:)
qlvltqpasvsgspgqsiivsctgtssdvggykfvswyqqhpgkaprvmiydvsnrpsgv
snrfsgsksgntasltisglqaddeadyycssytnsstvvfgggtkvtvlgqpkaapsvt
lfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaass
ylsltpeqwkshrsyscqvthegstvektvaptecs

    Sequence, based on observed residues (ATOM records): (download) 
    >7mf1L (L:)
lvltqpasvsgspgqsiivsctgtssdvggykfvswyqqhpgkaprvmiydvsnrpsgvs
nrfsgsksgntasltisglqaddeadyycssytnsstvvfgggtkvtvlgqpkaapsvtl
fppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaassy
lsltpeqwkshrsyscqvthegstvektvaptec