PDB entry 7kmh
View 7kmh on RCSB PDB site
Description: LY-CoV488 neutralizing antibody against SARS-CoV-2
Class: immune system/viral protein
Keywords: antibody neutralizing SARS-CoV-2, IMMUNE SYSTEM, IMMUNE SYSTEM-VIRAL PROTEIN complex
Deposited on
2020-11-02, released
2021-01-27
The last revision prior to the SCOPe 2.08 freeze date was dated
2021-01-27, with a file datestamp of
2021-01-22.
Experiment type: XRAY
Resolution: 1.72 Å
R-factor: N/A
AEROSPACI score: 0.47
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: LY-CoV488 Fab heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d7kmha1, d7kmha2 - Chain 'B':
Compound: LY-CoV488 Fab light chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d7kmhb1, d7kmhb2 - Chain 'C':
Compound: Spike protein S1
Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
Gene: S, 2
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d7kmhc1, d7kmhc2 - Heterogens: NAG, GOL, PRO, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>7kmhA (A:)
evqlvesgggliqpggslrlscaasgltvssnymswvrqapgkglewvsviysggstyya
dsvkgrftisrdnskntlylqmnslraedtavyycarspyggnswgqgtlvtvssastkg
psvfplapcsrstsestaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglysl
ssvvtvpssslgtktytcnvdhkpsntkvdkrvhhhhhh
Sequence, based on observed residues (ATOM records): (download)
>7kmhA (A:)
evqlvesgggliqpggslrlscaasgltvssnymswvrqapgkglewvsviysggstyya
dsvkgrftisrdnskntlylqmnslraedtavyycarspyggnswgqgtlvtvssastkg
psvfplapctsestaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglyslssv
vtvpssslgtktytcnvdhkpsntkvdkrv
- Chain 'B':
Sequence, based on SEQRES records: (download)
>7kmhB (B:)
diqmtqspsslsasvgdrvtitcqasqdisnylnwyqqkpgkapklliydasnletgvps
rfsgsgsgtdftftisslqpediatyycqqydnlpitfgqgtrleikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevtqgttsvtksfnrgec
Sequence, based on observed residues (ATOM records): (download)
>7kmhB (B:)
diqmtqspsslsasvgdrvtitcqasqdisnylnwyqqkpgkapklliydasnletgvps
rfsgsgsgtdftftisslqpediatyycqqydnlpitfgqgtrleikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevtqgttsvtksfnrge
- Chain 'C':
Sequence, based on SEQRES records: (download)
>7kmhC (C:)
fpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptkln
dlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggn
ynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpy
rvvvlsfellhapatvcgphhhhhh
Sequence, based on observed residues (ATOM records): (download)
>7kmhC (C:)
nlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcft
nvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynyly
rlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvvl
sfellhapatvcgph