PDB entry 7kmh

View 7kmh on RCSB PDB site
Description: LY-CoV488 neutralizing antibody against SARS-CoV-2
Class: immune system/viral protein
Keywords: antibody neutralizing SARS-CoV-2, IMMUNE SYSTEM, IMMUNE SYSTEM-VIRAL PROTEIN complex
Deposited on 2020-11-02, released 2021-01-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-01-27, with a file datestamp of 2021-01-22.
Experiment type: XRAY
Resolution: 1.72 Å
R-factor: N/A
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: LY-CoV488 Fab heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7KMH (0-End)
    Domains in SCOPe 2.08: d7kmha1, d7kmha2
  • Chain 'B':
    Compound: LY-CoV488 Fab light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7KMH (0-End)
    Domains in SCOPe 2.08: d7kmhb1, d7kmhb2
  • Chain 'C':
    Compound: Spike protein S1
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC2 (Start-198)
      • expression tag (199)
    Domains in SCOPe 2.08: d7kmhc1, d7kmhc2
  • Heterogens: NAG, GOL, PRO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >7kmhA (A:)
    evqlvesgggliqpggslrlscaasgltvssnymswvrqapgkglewvsviysggstyya
    dsvkgrftisrdnskntlylqmnslraedtavyycarspyggnswgqgtlvtvssastkg
    psvfplapcsrstsestaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglysl
    ssvvtvpssslgtktytcnvdhkpsntkvdkrvhhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >7kmhA (A:)
    evqlvesgggliqpggslrlscaasgltvssnymswvrqapgkglewvsviysggstyya
    dsvkgrftisrdnskntlylqmnslraedtavyycarspyggnswgqgtlvtvssastkg
    psvfplapctsestaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglyslssv
    vtvpssslgtktytcnvdhkpsntkvdkrv
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >7kmhB (B:)
    diqmtqspsslsasvgdrvtitcqasqdisnylnwyqqkpgkapklliydasnletgvps
    rfsgsgsgtdftftisslqpediatyycqqydnlpitfgqgtrleikrtvaapsvfifpp
    sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
    lskadyekhkvyacevtqgttsvtksfnrgec
    

    Sequence, based on observed residues (ATOM records): (download)
    >7kmhB (B:)
    diqmtqspsslsasvgdrvtitcqasqdisnylnwyqqkpgkapklliydasnletgvps
    rfsgsgsgtdftftisslqpediatyycqqydnlpitfgqgtrleikrtvaapsvfifpp
    sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
    lskadyekhkvyacevtqgttsvtksfnrge
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >7kmhC (C:)
    fpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptkln
    dlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggn
    ynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpy
    rvvvlsfellhapatvcgphhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >7kmhC (C:)
    nlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcft
    nvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynyly
    rlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvvl
    sfellhapatvcgph