PDB entry 7kfy
View 7kfy on RCSB PDB site
Description: Structural basis for a germline-biased antibody response to SARS-CoV-2 (RBD:C1A-F10 Fab)
Class: IMMUNE SYSTEM/Viral protein
Keywords: COVID-19, SARS-CoV-2, neutralizing antibody, affinity maturation, IMMUNE SYSTEM, IMMUNE SYSTEM-Viral protein complex
Deposited on
2020-10-15, released
2020-12-02
The last revision prior to the SCOPe 2.08 freeze date was dated
2021-01-20, with a file datestamp of
2021-01-15.
Experiment type: XRAY
Resolution: 2.16 Å
R-factor: N/A
AEROSPACI score: 0.34
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Spike glycoprotein
Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
Gene: S, 2
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d7kfya_ - Chain 'H':
Compound: heavy chain of human antibody C1A-F10 Fab
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d7kfyh_ - Chain 'L':
Compound: light chain of human antibody C1A-F10 Fab
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d7kfyl1, d7kfyl2 - Heterogens: NAG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>7kfyA (A:)
gsgsgrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsas
fstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcv
iawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplq
sygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnf
Sequence, based on observed residues (ATOM records): (download)
>7kfyA (A:)
nlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcft
nvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynyly
rlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvvl
sfellhapatvcgpk
- Chain 'H':
Sequence, based on SEQRES records: (download)
>7kfyH (H:)
evqlvesgggliqpggslrlscaasgftvssnymswvrqapgkglewvsviysggttyya
dsvkgrftisrdnskntlylqmnslraedtavyycargdvsgyrygldywgqgtlvtvsg
astkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqss
glyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepkscdr
Sequence, based on observed residues (ATOM records): (download)
>7kfyH (H:)
evqlvesgggliqpggslrlscaasgftvssnymswvrqapgkglewvsviysggttyya
dsvkgrftisrdnskntlylqmnslraedtavyycargdvsgyrygldywgqgtlvtvsg
astkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqss
glyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepksc
- Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
>7kfyL (L:)
diqltqspsslsasvgdrvtitcrasqgissylawyqqkpgkapklliyaastlengvps
rfsgsgsgtdftltisslqpedfatyycqqlnsypgtfgqgtkleikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrgec