PDB entry 7kfy

View 7kfy on RCSB PDB site
Description: Structural basis for a germline-biased antibody response to SARS-CoV-2 (RBD:C1A-F10 Fab)
Class: IMMUNE SYSTEM/Viral protein
Keywords: COVID-19, SARS-CoV-2, neutralizing antibody, affinity maturation, IMMUNE SYSTEM, IMMUNE SYSTEM-Viral protein complex
Deposited on 2020-10-15, released 2020-12-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-01-20, with a file datestamp of 2021-01-15.
Experiment type: XRAY
Resolution: 2.16 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Spike glycoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7kfya_
  • Chain 'H':
    Compound: heavy chain of human antibody C1A-F10 Fab
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7KFY (0-End)
    Domains in SCOPe 2.08: d7kfyh_
  • Chain 'L':
    Compound: light chain of human antibody C1A-F10 Fab
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7KFY (0-213)
    Domains in SCOPe 2.08: d7kfyl1, d7kfyl2
  • Heterogens: NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >7kfyA (A:)
    gsgsgrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsas
    fstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcv
    iawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplq
    sygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnf
    

    Sequence, based on observed residues (ATOM records): (download)
    >7kfyA (A:)
    nlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcft
    nvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynyly
    rlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvvl
    sfellhapatvcgpk
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >7kfyH (H:)
    evqlvesgggliqpggslrlscaasgftvssnymswvrqapgkglewvsviysggttyya
    dsvkgrftisrdnskntlylqmnslraedtavyycargdvsgyrygldywgqgtlvtvsg
    astkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqss
    glyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepkscdr
    

    Sequence, based on observed residues (ATOM records): (download)
    >7kfyH (H:)
    evqlvesgggliqpggslrlscaasgftvssnymswvrqapgkglewvsviysggttyya
    dsvkgrftisrdnskntlylqmnslraedtavyycargdvsgyrygldywgqgtlvtvsg
    astkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqss
    glyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepksc
    

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download)
    >7kfyL (L:)
    diqltqspsslsasvgdrvtitcrasqgissylawyqqkpgkapklliyaastlengvps
    rfsgsgsgtdftltisslqpedfatyycqqlnsypgtfgqgtkleikrtvaapsvfifpp
    sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
    lskadyekhkvyacevthqglsspvtksfnrgec