PDB entry 7jlk

View 7jlk on RCSB PDB site
Description: Crystal structure of glVRC01 Fab in complex with anti-idiotype iv1 scFv
Class: immune system
Keywords: iv1, glVRC01, Fab, scFv, HIV-1, anti-idiotype, IMMUNE SYSTEM
Deposited on 2020-07-29, released 2021-03-31
The last revision prior to the SCOPe 2.07 freeze date was dated 2021-03-31, with a file datestamp of 2021-03-26.
Experiment type: XRAY
Resolution: 1.99 Å
R-factor: N/A
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: glVRC01 Heavy Chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7JLK (0-End)
  • Chain 'B':
    Compound: glVRC01 Light Chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7JLK (0-209)
    Domains in SCOPe 2.07: d7jlkb1, d7jlkb2
  • Chain 'H':
    Compound: iv1 Heavy Chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 7JLK (0-End)
    Domains in SCOPe 2.07: d7jlkh_
  • Chain 'L':
    Compound: iv1 Light Chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 7JLK (0-End)
    Domains in SCOPe 2.07: d7jlkl_
  • Heterogens: NA, CL, PEG, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7jlkB (B:)
eivltqspatlslspgeratlscrasqsvssylawyqqkpgqaprlliydasnratgipa
rfsgsgsgtdftltisslepedfavyycqqyeffgqgtkleikrtvaapsvfifppsdeq
lksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltlska
dyekhkvyacevthqglsspvtksfnrgec

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >7jlkH (H:)
qiqlvqsgpelkkpgetvkisckasgytftnyeinwvqqapgkglklmgwintytgepts
addfkgrfafsletsastaylqinnlknedaatyfcargdyygsssawlpywgqgtlvtv
sagsgsghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >7jlkH (H:)
qiqlvqsgpelkkpgetvkisckasgytftnyeinwvqqapgkglklmgwintytgepts
addfkgrfafsletsastaylqinnlknedaatyfcargdyygsssawlpywgqgtlvtv
sa

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >7jlkL (L:)
divmtqsqkfmstsvgdrvsitckasqnvrtavawyqqkpgqspkaliflasnrhtgvpd
rftgsgsgtdftltisnvqsedladyfclqhwnypltfgggtkleikggggsggggsggg
gs

    Sequence, based on observed residues (ATOM records): (download) 
    >7jlkL (L:)
divmtqsqkfmstsvgdrvsitckasqnvrtavawyqqkpgqspkaliflasnrhtgvpd
rftgsgsgtdftltisnvqsedladyfclqhwnypltfgggtkleikggggs