PDB entry 7e8f

View 7e8f on RCSB PDB site
Description: SARS-CoV-2 NTD in complex with N9 Fab
Class: viral protein
Keywords: SARS-CoV-2, complex, antibody, VIRAL PROTEIN
Deposited on 2021-03-01, released 2021-06-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-07-14, with a file datestamp of 2021-07-09.
Experiment type: EM
Resolution: 3.18 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Spike protein S1
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: 368-2 l
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7E8F (0-218)
    Domains in SCOPe 2.08: d7e8fb_
  • Chain 'C':
    Compound: 368-2 h
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7E8F (0-229)
    Domains in SCOPe 2.08: d7e8fc_
  • Chain 'D':
    Compound: 604 h
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7E8F (0-221)
    Domains in SCOPe 2.08: d7e8fd_
  • Chain 'E':
    Compound: 604 l
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7E8F (0-213)
    Domains in SCOPe 2.08: d7e8fe_
  • Chain 'H':
    Compound: n9 h
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7E8F (0-229)
    Domains in SCOPe 2.08: d7e8fh_
  • Chain 'L':
    Compound: n9 l
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7E8F (0-211)
    Domains in SCOPe 2.08: d7e8fl1
  • Chain 'R':
    Compound: Spike protein S1
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7e8fr_

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >7e8fB (B:)
divmtqsplslpvtpgepasiscrssqsllhsngylyldwylqkpgqspqlliylgsnra
sgvpdrfsgsgsgtdftlkisrveaedvgvyycmqalqtpgtfgqgtrleikrtvaapsv
fifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysl
sstltlskadyekhkvyacevthqglsspvtksfnrgec

    Sequence, based on observed residues (ATOM records): (download) 
    >7e8fB (B:)
divmtqsplslpvtpgepasiscrssqsllhsngylyldwylqkpgqspqlliylgsnra
sgvpdrfsgsgsgtdftlkisrveaedvgvyycmqalqtpgtfgqgtrleik

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >7e8fC (C:)
evqllesgggvvqpggslrlscaasgfafttyamnwvrqapgrglewvsaisdgggsayy
adsvkgrftisrdnskntlylqmnslraedtavyycaktrgrglydyvwgskdywgqgtl
vtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpa
vlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscdk

    Sequence, based on observed residues (ATOM records): (download) 
    >7e8fC (C:)
vqllesgggvvqpggslrlscaasgfafttyamnwvrqapgrglewvsaisdgggsayya
dsvkgrftisrdnskntlylqmnslraedtavyycaktrgrglydyvwgskdywgqgtlv
tvss

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >7e8fD (D:)
evqlvesgggliqpggslrlscaasgiivssnymtwvrqapgkglewvsviysggstfya
dsvkgrftisrdkskntlylqmsslraedtavyycardlgpygmdvwgqgttvtvssast
kgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssgly
slssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscdk

    Sequence, based on observed residues (ATOM records): (download) 
    >7e8fD (D:)
evqlvesgggliqpggslrlscaasgiivssnymtwvrqapgkglewvsviysggstfya
dsvkgrftisrdkskntlylqmsslraedtavyycardlgpygmdvwgqgttvtvs

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >7e8fE (E:)
diqltqspsflsasvgdrvtitcrasqgissdlawyqqkpgkapnlliyaastlqsgvps
rfsgsgsgtdftltisslqpedfatyycqqlnsdlytfgqgtkleikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrgec

    Sequence, based on observed residues (ATOM records): (download) 
    >7e8fE (E:)
iqltqspsflsasvgdrvtitcrasqgissdlawyqqkpgkapnlliyaastlqsgvpsr
fsgsgsgtdftltisslqpedfatyycqqlnsdlytfgqgtkleik

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >7e8fH (H:)
evqlvesggglvkpggslrlscaaseftfssysmnwvrqapgkglewvssisssgsqiyy
adsvkgrftisrdnakkslylqmnslrvedtavyycatnggahsstwsfygmdvwgqgtt
vtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpa
vlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscdk

    Sequence, based on observed residues (ATOM records): (download) 
    >7e8fH (H:)
vqlvesggglvkpggslrlscaaseftfssysmnwvrqapgkglewvssisssgsqiyya
dsvkgrftisrdnakkslylqmnslrvedtavyycatnggahsstwsfygmdvwgqgttv
tvss

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >7e8fL (L:)
syeltqppsvsvspgqtatitcsgdklgdkyacwyqqrpgqspvlviyqdskrpsgiper
fsgsnsgntatltiggtqamdeaayfcqawdsntgvfgggtkltvlsqpkaapsvtlfpp
sseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaassylsl
tpeqwkshrsyscqvthegstvektvaptecs

    Sequence, based on observed residues (ATOM records): (download) 
    >7e8fL (L:)
yeltqppsvsvspgqtatitcsgdklgdkyacwyqqrpgqspvlviyqdskrpsgiperf
sgsnsgntatltiggtqamdeaayfcqawdsntgvfgggtkltvl

  • Chain 'R':
    Sequence, based on SEQRES records: (download) 
    >7e8fR (R:)
rvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfk
cygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawns
nnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfq
ptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnf

    Sequence, based on observed residues (ATOM records): (download) 
    >7e8fR (R:)
tnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcf
tnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynyl
yrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvv
lsfeatvcg