PDB entry 7e7y

View 7e7y on RCSB PDB site
Description: Crystal structure of the SARS-CoV-2 S RBD in complex with BD-623 Fab
Class: viral protein
Keywords: Spike RBD Antibody, VIRAL PROTEIN
Deposited on 2021-02-28, released 2021-06-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-07-14, with a file datestamp of 2021-07-09.
Experiment type: XRAY
Resolution: 2.41 Å
R-factor: N/A
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: BD-623 Fab H
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7E7Y (0-227)
    Domains in SCOPe 2.08: d7e7ya_
  • Chain 'B':
    Compound: BD-623 Fab L
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7E7Y (0-208)
    Domains in SCOPe 2.08: d7e7yb1, d7e7yb2
  • Chain 'C':
    Compound: BD-623 Fab H
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7E7Y (0-227)
    Domains in SCOPe 2.08: d7e7yc_
  • Chain 'D':
    Compound: BD-623 Fab L
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7E7Y (0-208)
    Domains in SCOPe 2.08: d7e7yd1, d7e7yd2
  • Chain 'E':
    Compound: Spike protein S1
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7e7ye_
  • Chain 'R':
    Compound: Spike protein S1
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7e7yr_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >7e7yA (A:)
    evqlvesggglvqpggslrlscaasgvtvssnymswvrqapgkglewvsavysggstyya
    dsvkgrftisrhnskntlylqmkslrpedtaiyycarlinhyydssgdggafdiwgqgtm
    vtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpa
    vlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepksc
    

    Sequence, based on observed residues (ATOM records): (download)
    >7e7yA (A:)
    vqlvesggglvqpggslrlscaasgvtvssnymswvrqapgkglewvsavysggstyyad
    svkgrftisrhnskntlylqmkslrpedtaiyycarlinhyydssgdggafdiwgqgtmv
    tvssastkgpsvfplapggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssgl
    yslssvvtvpssslgtqtyicnvnhkpsntkvdkkvep
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >7e7yB (B:)
    ltqpasvsgspgqsitisctgtssdvgsynlvswyqqrpgkapklilyevtkrpsgvsnr
    fsgsksgntaslaisglqaedeadyyccsyagsstwvfgggtkltvlgqpkaapsvtlfp
    psseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaassyls
    ltpeqwkshrsyscqvthegstvektvap
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >7e7yC (C:)
    evqlvesggglvqpggslrlscaasgvtvssnymswvrqapgkglewvsavysggstyya
    dsvkgrftisrhnskntlylqmkslrpedtaiyycarlinhyydssgdggafdiwgqgtm
    vtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpa
    vlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepksc
    

    Sequence, based on observed residues (ATOM records): (download)
    >7e7yC (C:)
    vqlvesggglvqpggslrlscaasgvtvssnymswvrqapgkglewvsavysggstyyad
    svkgrftisrhnskntlylqmkslrpedtaiyycarlinhyydsgdggafdiwgqgtmvt
    vssastkgpsvfplapgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglys
    lssvvtvpssslgtqtyicnvnhkpsntkvdkkvep
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >7e7yD (D:)
    ltqpasvsgspgqsitisctgtssdvgsynlvswyqqrpgkapklilyevtkrpsgvsnr
    fsgsksgntaslaisglqaedeadyyccsyagsstwvfgggtkltvlgqpkaapsvtlfp
    psseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaassyls
    ltpeqwkshrsyscqvthegstvektvap
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >7e7yE (E:)
    rvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfk
    cygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawns
    nnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfq
    ptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnf
    

    Sequence, based on observed residues (ATOM records): (download)
    >7e7yE (E:)
    tnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcf
    tnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynyl
    yrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvv
    lsfellhapatvcg
    

  • Chain 'R':
    Sequence, based on SEQRES records: (download)
    >7e7yR (R:)
    rvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfk
    cygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawns
    nnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfq
    ptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnf
    

    Sequence, based on observed residues (ATOM records): (download)
    >7e7yR (R:)
    tnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcf
    tnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynyl
    yrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvv
    lsfeatvcg