PDB entry 7dea

View 7dea on RCSB PDB site
Description: Structure of an avian influenza H5 hemagglutinin from the influenza virus A/duck Northern China/22/2017 (H5N6)
Class: viral protein
Keywords: H5N6 avian influenza virus, Haemagglutinin, Neuraminidase, Acid stability, Human infection, VIRAL PROTEIN
Deposited on 2020-11-03, released 2021-11-03
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-11-03, with a file datestamp of 2021-10-29.
Experiment type: XRAY
Resolution: 2.84 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:11320]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • PDB 7DEA (0-318)
    Domains in SCOPe 2.08: d7deaa_
  • Chain 'B':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:11320]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7deab_
  • Chain 'C':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:11320]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • PDB 7DEA (0-318)
    Domains in SCOPe 2.08: d7deac_
  • Chain 'D':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:11320]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7dead_
  • Chain 'E':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:11320]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • PDB 7DEA (0-318)
    Domains in SCOPe 2.08: d7deae_
  • Chain 'F':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:11320]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7deaf_
  • Heterogens: NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7deaA (A:)
dqicigyhannsteqvdtimeknvtvthaqdilekthngklcdlngvkplilkdcsvagw
llgnpmcdefirvpewsyiveranpandlcypgnlndyeelkhllsrinhfektqiipks
swpnhtssgvsaacpyqgmpsffrnvvwltkkndayptirmsynntnredllilwgihhs
nnaeeqtnlyknpttyvsvgtstlnqrlvpkiatrsqvngqrgrmdffwtilrpndaihf
esngnfiapeyaykiiktgdstimksemeygncntkcqtpigainssmpfhnihpltige
cpkyvksnklvlatglrnn

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7deaB (B:)
lfgaiagfieggwqgmvdgwygyhhsneqgsgyaadrestqkaidgvtnkvnsiidkmnt
qfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlydk
vrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkree

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7deaC (C:)
dqicigyhannsteqvdtimeknvtvthaqdilekthngklcdlngvkplilkdcsvagw
llgnpmcdefirvpewsyiveranpandlcypgnlndyeelkhllsrinhfektqiipks
swpnhtssgvsaacpyqgmpsffrnvvwltkkndayptirmsynntnredllilwgihhs
nnaeeqtnlyknpttyvsvgtstlnqrlvpkiatrsqvngqrgrmdffwtilrpndaihf
esngnfiapeyaykiiktgdstimksemeygncntkcqtpigainssmpfhnihpltige
cpkyvksnklvlatglrnn

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7deaD (D:)
lfgaiagfieggwqgmvdgwygyhhsneqgsgyaadrestqkaidgvtnkvnsiidkmnt
qfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlydk
vrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkree

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7deaE (E:)
dqicigyhannsteqvdtimeknvtvthaqdilekthngklcdlngvkplilkdcsvagw
llgnpmcdefirvpewsyiveranpandlcypgnlndyeelkhllsrinhfektqiipks
swpnhtssgvsaacpyqgmpsffrnvvwltkkndayptirmsynntnredllilwgihhs
nnaeeqtnlyknpttyvsvgtstlnqrlvpkiatrsqvngqrgrmdffwtilrpndaihf
esngnfiapeyaykiiktgdstimksemeygncntkcqtpigainssmpfhnihpltige
cpkyvksnklvlatglrnn

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7deaF (F:)
lfgaiagfieggwqgmvdgwygyhhsneqgsgyaadrestqkaidgvtnkvnsiidkmnt
qfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlydk
vrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkree