PDB entry 7ch5

View 7ch5 on RCSB PDB site
Description: Crystal structure of the SARS-CoV-2 S RBD in complex with BD-629 Fab
Class: protein binding/immune system
Keywords: Complex, PROTEIN BINDING-IMMUNE SYSTEM complex
Deposited on 2020-07-05, released 2020-09-16
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-03-10, with a file datestamp of 2021-03-05.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'H':
    Compound: BD-629 Fab H
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7CH5 (0-End)
    Domains in SCOPe 2.08: d7ch5h_
  • Chain 'L':
    Compound: BD-629 Fab L
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7CH5 (0-End)
    Domains in SCOPe 2.08: d7ch5l1, d7ch5l2
  • Chain 'R':
    Compound: Spike protein S1
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7ch5r_

PDB Chain Sequences:

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >7ch5H (H:)
evqlvesgggliqpggslrlscaasefivsrnymswvrqapgkglewvsviysggstyya
dsvkgrftisrdnskntlnlqmnslraedtavyycardygdyyfdywgqgtlvtvssast
kgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssgly
slssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscdk

    Sequence, based on observed residues (ATOM records): (download) 
    >7ch5H (H:)
evqlvesgggliqpggslrlscaasefivsrnymswvrqapgkglewvsviysggstyya
dsvkgrftisrdnskntlnlqmnslraedtavyycardygdyyfdywgqgtlvtvssast
kgpsvfplapsgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglyslssvv
tvpssslgtqtyicnvnhkpsntkvdkkvep

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >7ch5L (L:)
eivltqspgtlslspgeratlscrasqgvssflawyqqkpgqaprllihgassratgipd
rfsgsgsgtdftltitrlepedfavyycqqygssprtfgqgtkveikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrgec

    Sequence, based on observed residues (ATOM records): (download) 
    >7ch5L (L:)
eivltqspgtlslspgeratlscrasqgvssflawyqqkpgqaprllihgassratgipd
rfsgsgsgtdftltitrlepedfavyycqqygssprtfgqgtkveikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrge

  • Chain 'R':
    Sequence, based on SEQRES records: (download) 
    >7ch5R (R:)
rvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfk
cygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawns
nnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfq
ptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnf

    Sequence, based on observed residues (ATOM records): (download) 
    >7ch5R (R:)
nlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcft
nvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynyly
rlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvvl
sfe