PDB entry 7bz5

View 7bz5 on RCSB PDB site
Description: Structure of COVID-19 virus spike receptor-binding domain complexed with a neutralizing antibody
Class: viral protein/immune system
Keywords: covid-19 antibody, VIRAL PROTEIN, VIRAL PROTEIN-IMMUNE SYSTEM complex
Deposited on 2020-04-26, released 2020-05-13
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-03-10, with a file datestamp of 2021-03-05.
Experiment type: XRAY
Resolution: 1.84 Å
R-factor: N/A
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Spike protein S1
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7bz5a_
  • Chain 'H':
    Compound: Heavy chain of B38
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7BZ5
    Domains in SCOPe 2.08: d7bz5h_
  • Chain 'L':
    Compound: Light chain of B38
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7BZ5
    Domains in SCOPe 2.08: d7bz5l1, d7bz5l2
  • Heterogens: NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7bz5A (A:)
rvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfk
cygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawns
nnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfq
ptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >7bz5A (A:)
nlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcft
nvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynyly
rlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvvl
sfellapatvcgpk

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >7bz5H (H:)
gdevqlvesggglvqpggslrlscaasgfivssnymswvrqapgkglewvsviysggsty
yadsvkgrftisrhnskntlylqmnslraedtavyycareaygmdvwgqgttvtvssast
kgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssgly
slssvvtvpssslgtqtyicnvnhkpsntkvdkrvepkscdk

    Sequence, based on observed residues (ATOM records): (download) 
    >7bz5H (H:)
devqlvesggglvqpggslrlscaasgfivssnymswvrqapgkglewvsviysggstyy
adsvkgrftisrhnskntlylqmnslraedtavyycareaygmdvwgqgttvtvssastk
gpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglys
lssvvtvpssslgtqtyicnvnhkpsntkvdkrvepks

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >7bz5L (L:)
gddivmtqspsflsasvgdrvtitcrasqgissylawyqqkpgkapklliyaastlqsgv
psrfsgsgsgteftltisslqpedfatyycqqlnsyppytfgqgtkleikrtvaapsvfi
fppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslss
tltlskadyekhkvyacevthqglsspvtksfnrgecs

    Sequence, based on observed residues (ATOM records): (download) 
    >7bz5L (L:)
ddivmtqspsflsasvgdrvtitcrasqgissylawyqqkpgkapklliyaastlqsgvp
srfsgsgsgteftltisslqpedfatyycqqlnsyppytfgqgtkleikrtvaapsvfif
ppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsst
ltlskadyekhkvyacevthqglsspvtksfnrgec