PDB entry 7bya

View 7bya on RCSB PDB site
Description: Malate Dehydrogenase from Geobacillus stearothermophilus (gs-MDH) complexed with Oxaloacetic Acid (OAA) and Adenosine 5'-Diphosphoribose (APR)
Class: oxidoreductase
Keywords: Malate Dehydrogenase, OXIDOREDUCTASE
Deposited on 2020-04-22, released 2021-03-24
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-03-24, with a file datestamp of 2021-03-19.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: malate dehydrogenase
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Gene: MDH
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7byaa1, d7byaa2
  • Chain 'B':
    Compound: malate dehydrogenase
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Gene: MDH
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7byab1, d7byab2
  • Chain 'C':
    Compound: malate dehydrogenase
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Gene: MDH
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7byac1, d7byac2
  • Chain 'D':
    Compound: malate dehydrogenase
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Gene: MDH
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7byad1, d7byad2
  • Heterogens: OAA, APR, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7byaA (A:)
mgsshhhhhhssglvprgshmamkrkkisvigagftgattafllaqkelgdvvlvdipql
enptkgkaldmleaspvlgfdaniigtsdyadtadsdivvitagiarkpgmsrddlvttn
qkimkqvtkevvkyspncyiivltnpvdamtytvfkesgfpknrvigqsgvldtarfrtf
vaeelnisvkdvtgfvlgghgddmvplvrysyaggipleklipkdrldaivertrkggge
ivnllgngsayyapaaslvemveailkdqrrilpaiaylegeygyegiylgvptilggng
iekvielelteeekaalaksvesvknvmrmle

    Sequence, based on observed residues (ATOM records): (download) 
    >7byaA (A:)
amkrkkisvigagftgattafllaqkelgdvvlvdipqlenptkgkaldmleaspvlgfd
aniigtsdyadtadsdivvitagiarkpgmsrddlvttnqkimkqvtkevvkyspncyii
vltnpvdamtytvfkesgfpknrvigqsgvldtarfrtfvaeelnisvkdvtgfvlgghg
ddmvplvrysyaggipleklipkdrldaivertrkgggeivnllgngsayyapaaslvem
veailkdqrrilpaiaylegeygyegiylgvptilggngiekvielelteeekaalaksv
esvknvmrmle

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >7byaB (B:)
mgsshhhhhhssglvprgshmamkrkkisvigagftgattafllaqkelgdvvlvdipql
enptkgkaldmleaspvlgfdaniigtsdyadtadsdivvitagiarkpgmsrddlvttn
qkimkqvtkevvkyspncyiivltnpvdamtytvfkesgfpknrvigqsgvldtarfrtf
vaeelnisvkdvtgfvlgghgddmvplvrysyaggipleklipkdrldaivertrkggge
ivnllgngsayyapaaslvemveailkdqrrilpaiaylegeygyegiylgvptilggng
iekvielelteeekaalaksvesvknvmrmle

    Sequence, based on observed residues (ATOM records): (download) 
    >7byaB (B:)
amkrkkisvigagftgattafllaqkelgdvvlvdipqlenptkgkaldmleaspvlgfd
aniigtsdyadtadsdivvitagiarkpgmsrddlvttnqkimkqvtkevvkyspncyii
vltnpvdamtytvfkesgfpknrvigqsgvldtarfrtfvaeelnisvkdvtgfvlgghg
ddmvplvrysyaggipleklipkdrldaivertrkgggeivnllgngsayyapaaslvem
veailkdqrrilpaiaylegeygyegiylgvptilggngiekvielelteeekaalaksv
esvknvmrmle

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >7byaC (C:)
mgsshhhhhhssglvprgshmamkrkkisvigagftgattafllaqkelgdvvlvdipql
enptkgkaldmleaspvlgfdaniigtsdyadtadsdivvitagiarkpgmsrddlvttn
qkimkqvtkevvkyspncyiivltnpvdamtytvfkesgfpknrvigqsgvldtarfrtf
vaeelnisvkdvtgfvlgghgddmvplvrysyaggipleklipkdrldaivertrkggge
ivnllgngsayyapaaslvemveailkdqrrilpaiaylegeygyegiylgvptilggng
iekvielelteeekaalaksvesvknvmrmle

    Sequence, based on observed residues (ATOM records): (download) 
    >7byaC (C:)
amkrkkisvigagftgattafllaqkelgdvvlvdipqlenptkgkaldmleaspvlgfd
aniigtsdyadtadsdivvitagiddlvttnqkimkqvtkevvkyspncyiivltnpvda
mtytvfkesgfpknrvigqsgvldtarfrtfvaeelnisvkdvtgfvlgghgddmvplvr
ysyaggipleklipkdrldaivertrkgggeivnllgngsayyapaaslvemveailkdq
rrilpaiaylegeygyegiylgvptilggngiekvielelteeekaalaksvesvknvmr
mle

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >7byaD (D:)
mgsshhhhhhssglvprgshmamkrkkisvigagftgattafllaqkelgdvvlvdipql
enptkgkaldmleaspvlgfdaniigtsdyadtadsdivvitagiarkpgmsrddlvttn
qkimkqvtkevvkyspncyiivltnpvdamtytvfkesgfpknrvigqsgvldtarfrtf
vaeelnisvkdvtgfvlgghgddmvplvrysyaggipleklipkdrldaivertrkggge
ivnllgngsayyapaaslvemveailkdqrrilpaiaylegeygyegiylgvptilggng
iekvielelteeekaalaksvesvknvmrmle

    Sequence, based on observed residues (ATOM records): (download) 
    >7byaD (D:)
amkrkkisvigagftgattafllaqkelgdvvlvdipqlenptkgkaldmleaspvlgfd
aniigtsdyadtadsdivvitagiarkpgmsrddlvttnqkimkqvtkevvkyspncyii
vltnpvdamtytvfkesgfpknrvigqsgvldtarfrtfvaeelnisvkdvtgfvlgghg
ddmvplvrysyaggipleklipkdrldaivertrkgggeivnllgngsayyapaaslvem
veailkdqrrilpaiaylegeygyegiylgvptilggngiekvielelteeekaalaksv
esvknvmrmle