PDB entry 7b18
View 7b18 on RCSB PDB site
Description: SARS-CoV-spike bound to two neutralising nanobodies
Class: viral protein
Keywords: spike glycoprotein, SARS-CoV-2, nanobody, VIRAL PROTEIN
Deposited on
2020-11-24, released
2021-04-28
The last revision prior to the SCOPe 2.08 freeze date was dated
2021-04-28, with a file datestamp of
2021-04-23.
Experiment type: EM
Resolution: 2.62 Å
R-factor: N/A
AEROSPACI score: 0.27
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Spike glycoprotein
Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
Gene: S, 2
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: Spike glycoprotein
Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
Gene: S, 2
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: Spike glycoprotein
Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
Gene: S, 2
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: Nanobody against SARS-CoV-2 VHH E
Species: Lama glama [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d7b18d_ - Chain 'E':
Compound: Nanobody against spike glycoprotein VHH V
Species: Vicugna pacos [TaxId:30538]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d7b18e_ - Chain 'F':
Compound: Nanobody against SARS-CoV-2 VHH E
Species: Lama glama [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d7b18f_ - Chain 'G':
Compound: Nanobody against spike glycoprotein VHH V
Species: Vicugna pacos [TaxId:30538]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d7b18g_ - Chain 'H':
Compound: Nanobody against SARS-CoV-2 VHH E
Species: Lama glama [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d7b18h_ - Chain 'I':
Compound: Nanobody against spike glycoprotein VHH V
Species: Vicugna pacos [TaxId:30538]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d7b18i_ - Heterogens: NAG
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
No sequence available.
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence, based on SEQRES records: (download)
>7b18D (D:)
sqvqlvetgggfvqpggslrlscaasgvtldyyaigwfrqapgkeregvscigssdgrty
ysdsvkgrftisrdnakntvylqmnslkpedtavyycaltvgtyysgnyhytcsddmdyw
gkgtqvtvss
Sequence, based on observed residues (ATOM records): (download)
>7b18D (D:)
qvqlvetgggfvqpggslrlscaasgvtldyyaigwfrqapgkeregvscigssdgrtyy
sdsvkgrftisrdnakntvylqmnslkpedtavyycaltvgtyysgnyhytcsddmdywg
kgtqvtvss
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>7b18E (E:)
qvqlvetggglvqpggslrlscaasgftfssyamgwarqvpgkglewvsyiysdgsteyq
dsvkgrftisrdnakstvylqmnslkpedtavyycategslggwgrdfgswgqgtqvtvs
s
- Chain 'F':
Sequence, based on SEQRES records: (download)
>7b18F (F:)
sqvqlvetgggfvqpggslrlscaasgvtldyyaigwfrqapgkeregvscigssdgrty
ysdsvkgrftisrdnakntvylqmnslkpedtavyycaltvgtyysgnyhytcsddmdyw
gkgtqvtvss
Sequence, based on observed residues (ATOM records): (download)
>7b18F (F:)
qvqlvetgggfvqpggslrlscaasgvtldyyaigwfrqapgkeregvscigssdgrtyy
sdsvkgrftisrdnakntvylqmnslkpedtavyycaltvgtyysgnyhytcsddmdywg
kgtqvtvss
- Chain 'G':
Sequence; same for both SEQRES and ATOM records: (download)
>7b18G (G:)
qvqlvetggglvqpggslrlscaasgftfssyamgwarqvpgkglewvsyiysdgsteyq
dsvkgrftisrdnakstvylqmnslkpedtavyycategslggwgrdfgswgqgtqvtvs
s
- Chain 'H':
Sequence, based on SEQRES records: (download)
>7b18H (H:)
sqvqlvetgggfvqpggslrlscaasgvtldyyaigwfrqapgkeregvscigssdgrty
ysdsvkgrftisrdnakntvylqmnslkpedtavyycaltvgtyysgnyhytcsddmdyw
gkgtqvtvss
Sequence, based on observed residues (ATOM records): (download)
>7b18H (H:)
qvqlvetgggfvqpggslrlscaasgvtldyyaigwfrqapgkeregvscigssdgrtyy
sdsvkgrftisrdnakntvylqmnslkpedtavyycaltvgtyysgnyhytcsddmdywg
kgtqvtvss
- Chain 'I':
Sequence; same for both SEQRES and ATOM records: (download)
>7b18I (I:)
qvqlvetggglvqpggslrlscaasgftfssyamgwarqvpgkglewvsyiysdgsteyq
dsvkgrftisrdnakstvylqmnslkpedtavyycategslggwgrdfgswgqgtqvtvs
s