PDB entry 6yy3

View 6yy3 on RCSB PDB site
Description: XFEL structure of the Soluble methane monooxygenase hydroxylase and regulatory subunit complex, from Methylosinus trichosporium OB3b, t=0 diferrous state prior to oxygen activation
Class: oxidoreductase
Keywords: Ferritin superfamily, Soluble methane monooxygenase, Di-iron oxygen activation, Substrate oxidation., OXIDOREDUCTASE
Deposited on 2020-05-04, released 2020-09-30
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-09-30, with a file datestamp of 2020-09-25.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'B':
    Compound: Methane monooxygenase
    Species: METHYLOSINUS TRICHOSPORIUM OB3B [TaxId:595536]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6yy3b_
  • Chain 'D':
    Compound: Methane monooxygenase component A alpha chain
    Species: METHYLOSINUS TRICHOSPORIUM OB3B [TaxId:595536]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6yy3d_
  • Chain 'F':
    Compound: Methane monooxygenase
    Species: METHYLOSINUS TRICHOSPORIUM OB3B [TaxId:595536]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6yy3f_
  • Chain 'G':
    Compound: Methane monooxygenase regulatory protein B
    Species: METHYLOSINUS TRICHOSPORIUM OB3B [TaxId:595536]
    Gene: mmoB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6yy3g_
  • Heterogens: FE2, GOL, HOH

PDB Chain Sequences:

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6yy3B (B:)
msqpqssqvtkrgltdperaaiiaaavpdhaldtqrkyhyfiqprwkrlseyeqlscyaq
pnpdwiaggldwgdwtqkfhggrpswgnestelrttdwyrhrdparrwhhpyvkdkseea
rytqrflaayssegsirtidpywrdeilnkyfgallyseyglfnahssvgrdclsdtirq
tavfaaldkvdnaqmiqmerlfiaklvpgfdastdvpkkiwttdpiysgaratvqeiwqg
vqdwneilwaghavydatfgqfarreffqrlatvygdtltpfftaqsqtyfqttrgaidd
lfvyclandsefgahnrtflnawtehylassvaalkdfvglyakvekvagatdragvsea
lqrvfgdwkidyadkigfrvdvdqkvdavlagykn

    Sequence, based on observed residues (ATOM records): (download) 
    >6yy3B (B:)
pqssqvtkrgltdperaaiiaaavpdhaldtqrkyhyfiqprwkrlseyeqlscyaqpnp
dwiaggldwgdwtqkfhggrpswgnestelrttdwyrhrdparrwhhpyvkdkseearyt
qrflaayssegsirtidpywrdeilnkyfgallyseyglfnahssvgrdclsdtirqtav
faaldkvdnaqmiqmerlfiaklvpgfdastdvpkkiwttdpiysgaratvqeiwqgvqd
wneilwaghavydatfgqfarreffqrlatvygdtltpfftaqsqtyfqttrgaiddlfv
yclandsefgahnrtflnawtehylassvaalkdfvglyakvekvagatdragvsealqr
vfgdwkidyadkigfrvdvdqkvdavlagy

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6yy3D (D:)
maislatkaatdalkvnrapvgvepqevhkwlqsfnwdfkenrtkyptkyhmanetkeqf
kviakeyarmeaakderqfgtlldgltrlgagnkvhprwgetmkvisnflevgeynaiaa
samlwdsataaeqkngylaqvldeirhthqcafinhyyskhyhdpaghndarrtraigpl
wkgmkrvfadgfisgdavecsvnlqlvgeacftnplivavtewasangdeitptvflsve
tdelrhmangyqtvvsiandpasakflntdlnnafwtqqkyftpvlgylfeygskfkvep
wvktwnrwvyedwggiwigrlgkygvespaslrdakrdaywahhdlalaayamwplgfar
lalpdeedqawfeanypgwadhygkifnewkklgyedpksgfipyqwllanghdvyidrv
sqvpfipslakgtgslrvhefngkkhsltddwgerqwlieperyechnvfeqyegrelse
viaeghgvrsdgktliaqphtrgdnlwtledikragcvfpdplakf

    Sequence, based on observed residues (ATOM records): (download) 
    >6yy3D (D:)
dalkvnrapvgvepqevhkwlqsfnwdfkenrtkyptkyhmanetkeqfkviakeyarme
aakderqfgtlldgltrlgagnkvhprwgetmkvisnflevgeynaiaasamlwdsataa
eqkngylaqvldeirhthqcafinhyyskhyhdpaghndarrtraigplwkgmkrvfadg
fisgdavecsvnlqlvgeacftnplivavtewasangdeitptvflsvetdelrhmangy
qtvvsiandpasakflntdlnnafwtqqkyftpvlgylfeygskfkvepwvktwnrwvye
dwggiwigrlgkygvespaslrdakrdaywahhdlalaayamwplgfarlalpdeedqaw
feanypgwadhygkifnewkklgyedpksgfipyqwllanghdvyidrvsqvpfipslak
gtgslrvhefngkkhsltddwgerqwlieperyechnvfeqyegrelseviaeghgvrsd
gktliaqphtrgdnlwtledikragcvfpdplakf

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6yy3F (F:)
makrepihdnsirteweakiakltsvdqatkfiqdfrlaytspfrksydidvdyqyierk
ieeklsvlkteklpvadlitkattgedaaaveatwiakikaakskyeaerihiefrqlyk
ppvlpvnvflrtdaalgtvlmeirntdyygtpleglrkergvkvlhlqa

    Sequence, based on observed residues (ATOM records): (download) 
    >6yy3F (F:)
akrepihdnsirteweakiakltsvdqatkfiqdfrlaytspfrksydidvdyqyierki
eeklsvlkteklpvadlitkattgedaaaveatwiakikaakskyeaerihiefrqlykp
pvlpvnvflrtdaalgtvlmeirntdyygtpleglrkergvkvlhlqa

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >6yy3G (G:)
mssahnaynagimqktgkafadeffaeenqvvhesnavvlvlmksdeidaiiedivlkgg
kaknpsivvedkagfwwikadgaieidaaeagellgkpfsvydllinvsstvgraytlgt
kftitselmgldraltdi

    Sequence, based on observed residues (ATOM records): (download) 
    >6yy3G (G:)
sahnaynagimqktgkafadeffaeenqvvhesnavvlvlmksdeidaiiedivlkggka
knpsivvedkagfwwikadgaieidaaeagellgkpfsvydllinvsstvgraytlgtkf
titselmgldraltdi