PDB entry 6yez

View 6yez on RCSB PDB site
Description: Plant PSI-ferredoxin-plastocyanin supercomplex
Class: photosynthesis
Keywords: Membrane complex, photosystem I, ferredoxin, light harvesting, excitation transfer, PHOTOSYNTHESIS
Deposited on 2020-03-25, released 2020-09-30
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-07-07, with a file datestamp of 2021-07-02.
Experiment type: EM
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: Lhca1
    Species: Pisum sativum [TaxId:3888]
    Database cross-references and differences (RAF-indexed):
    • PDB 6YEZ (0-192)
    Domains in SCOPe 2.08: d6yez1_
  • Chain '2':
    Compound: Chlorophyll a-b binding protein, chloroplastic
    Species: PISUM SATIVUM [TaxId:3888]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6yez2_
  • Chain '3':
    Compound: Chlorophyll a-b binding protein 3, chloroplastic
    Species: PISUM SATIVUM [TaxId:3888]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6yez3_
  • Chain '4':
    Compound: chlorophyll a-b binding protein p4, chloroplastic
    Species: PISUM SATIVUM [TaxId:3888]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9SQL2 (0-197)
      • conflict (37)
      • conflict (76)
      • conflict (97)
    Domains in SCOPe 2.08: d6yez4_
  • Chain 'A':
    Compound: photosystem I p700 chlorophyll a apoprotein a1
    Species: PISUM SATIVUM [TaxId:3888]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6yeza_
  • Chain 'B':
    Compound: photosystem I p700 chlorophyll a apoprotein a2
    Species: PISUM SATIVUM [TaxId:3888]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6yezb_
  • Chain 'C':
    Compound: photosystem I iron-sulfur center
    Species: PISUM SATIVUM [TaxId:3888]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6yezc_
  • Chain 'D':
    Compound: PsaD
    Species: Pisum sativum [TaxId:3888]
    Database cross-references and differences (RAF-indexed):
    • PDB 6YEZ (0-142)
    Domains in SCOPe 2.08: d6yezd_
  • Chain 'E':
    Compound: PsaE
    Species: Pisum sativum [TaxId:3888]
    Database cross-references and differences (RAF-indexed):
    • PDB 6YEZ (0-65)
    Domains in SCOPe 2.08: d6yeze1, d6yeze2
  • Chain 'F':
    Compound: PsaF
    Species: Pisum sativum [TaxId:3888]
    Database cross-references and differences (RAF-indexed):
    • PDB 6YEZ (0-153)
    Domains in SCOPe 2.08: d6yezf_
  • Chain 'G':
    Compound: PsaG
    Species: Pisum sativum [TaxId:3888]
    Database cross-references and differences (RAF-indexed):
    • PDB 6YEZ (0-96)
  • Chain 'H':
    Compound: PsaH
    Species: Pisum sativum [TaxId:3888]
    Database cross-references and differences (RAF-indexed):
    • PDB 6YEZ (0-92)
  • Chain 'I':
    Compound: Photosystem I reaction center subunit VIII
    Species: PISUM SATIVUM [TaxId:3888]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: PsaJ
    Species: Pisum sativum [TaxId:3888]
    Database cross-references and differences (RAF-indexed):
    • PDB 6YEZ (0-41)
    Domains in SCOPe 2.08: d6yezj_
  • Chain 'K':
    Compound: Photosystem I reaction center subunit X psaK
    Species: PISUM SATIVUM [TaxId:3888]
    Database cross-references and differences (RAF-indexed):
    • Uniprot E1C9L3 (0-80)
      • conflict (40)
  • Chain 'L':
    Compound: PsaL
    Species: Pisum sativum [TaxId:3888]
    Database cross-references and differences (RAF-indexed):
    • PDB 6YEZ (0-158)
    Domains in SCOPe 2.08: d6yezl_
  • Chain 'N':
    Compound: Ferredoxin-1, chloroplastic
    Species: PISUM SATIVUM [TaxId:3888]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6yezn_
  • Chain 'P':
    Compound: Plastocyanin, chloroplastic
    Species: PISUM SATIVUM [TaxId:3888]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6yezp_
  • Heterogens: CL0, CLA, PQN, BCR, LHG, LMT, SF4, LMG, CA, DGD, LUT, CHL, XAT, 3PH, C7Z, FES, CU, HOH

PDB Chain Sequences:

  • Chain '1':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6yez1 (1:)
dwmpgqprpsyldgsapgdfgfdplrlgevpenlerfkeselihcrwamlavpgilvpea
lglgnwvkaqewaalpggqatylgnpvpwgtlptilvieflsiafvehqrsmekdpekkk
ypggafdplgyskdpkkfheykikevkngrlallafvgicvqqsaypgtgplenlathla
dpwhntignvlip

  • Chain '2':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6yez2 (2:)
tvaepdrplwfpgstpppwldgslpgdfgfdplglgsdpeslrwnvqaelvhsrwamlga
agifipefltklgilntpswytageqeyftdtttlfivelvfigwaegrrwadilnpgcv
ntdpifpnnkltgtdvgypgglwfdplgwgsaspqklkelrtkeikngrlamlavmgawf
qhiytgtgpidnlfahladpghatifaa

  • Chain '3':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6yez3 (3:)
rplwfaskqslsyldgslpgdygfdplglsdpegtggfieprwlaygevingrfamlgav
gaiapeylgkvglipqetalawfqtgvippagtynywadnytlfvlemalmgfaehrrfq
dwakpgsmgkqyflglekgfggsgnpaypggpffnplgfgkdekslkelklkevkngrla
mlailgyfiqglvtgvgpyqnlldhvadpvnnnvltslkfh

  • Chain '4':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6yez4 (4:)
kkgewlpglaspgyltgslpgdngfdplglaedpenlkwfvqaelvngrwamlgvagmll
pevftsigiinvpkwydagkeeyfassstlfviefilfhyveirrwqdiknpgsvnqdpi
fkqyslpagevgypggifnplnfaptleakekeiangrlamlaflgfiiqhnvtgkgpfd
nllqhisdpwhntivqtl

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6yezA (A:)
pevkilvdrdpiktsfeqwakpghfsrtiakgpdtttwiwnlhadahdfdshtsdleeis
rkvfsahfgqlsiiflwlsgmyfhgarfsnyeawlndpthirpsaqvvwpivgqeilngd
vgggfrgiqitsgffqiwrasgitselqlyctaigalvfaalmlfagwfhyhkaapklvw
fqdvesmlnhhlagllglgslswaghqvhvslpinqflnagvdpkeiplphefilnrdll
aqlypsfaegatpfftlnwskyadfltfrggldpltgglwltdiahhhlaiailfliagh
myrtnwgighgikdileahkgpftgqghkglyeilttswhaqlsinlamlgsltiivahh
myamppypylatdygtqlslfthhmwiggflivgaaahaaifmvrdydpttryndlldrv
lrhrdaiishlnwvciflgfhsfglyihndtmsalgrpqdmfsdtaiqlqpvfaqwiqnt
halapgttapgattstsltwgggdlvsvggkvallpiplgtadflvhhihaftihvtvli
llkgvlfarssrlipdkanlgfrfpcdgpgrggtcqvsawdhvflglfwmynaisvvifh
fswkmqsdvwgsindqgvvthitggnfaqssitingwlrdflwaqasqviqsygsslsay
glfflgahfvwafslmflfsgrgywqeliesivwahnklkvapatqpralsivqgravgv
thyllggiattwafflariiavg

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6yezB (B:)
alrfprfsqglaqdpttrriwfgiatahdfeshdditegrlyqnifashfgqlaiiflwt
sgnlfhvawqgnfeawvqdplhvrpiahaiwdphfgqpaveaftrggalgpvniaysgvy
qwwytiglrtnedlytgaifllflsfisllagwlhlqpkwkpsvswfknaesrlnhhlsg
lfgvsslawaghlvhvaipgsrgeyvrwnnflsvlphpqglgplftgqwnlyaqnpdssn
hlfstsqgagtailtllggfhpqtqslwltdmahhhlaiailfligghmyrtnfgighsi
kyileahippggrlgrghkglydtinnsihfqlglalaslgvitslvaqhmyslpayafi
aqdfttqaalythhqyiagfimtgafahgaiffirdynpeqnadnvlarmlehkeaiish
lswaslflgfhtlglyvhndvmlafgtpekqiliepifaqwiqsahgktsygfdvllsst
nspalnagrsiwlpgwlnainensnslfltigpgdflvhhaialglhtttlilvkgalda
rgsklmpdkkdfgysfpcdgpgrggtcdisawdafylavfwmlntigwvtfywhwkhitl
wqgnvsqfnesstylmgwlrdylwlnssqlingynpfgmnslsvwawmflfghlvwatgf
mfliswrgywqelietlawahertplanlirwrdkpvalsivqarlvglvhfsvgyifty
aafliastsgkfg

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6yezC (C:)
shsvkiydtcigctqcvracptdvlemipwggckakqiasaprtedcvgckrcesacptd
flsvrvylwhettrsmglay

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6yezD (D:)
gftppeldpntpspifggstggllrkaqveefyvitwespkeqifemptggaaimregpn
llklarkeqclalgtrlrskykikyqfyrvfpsgevqylhpkdgvypekvnpgrqgvgvn
frsigknvspievkftgkqpydl

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6yezE (E:)
ppigpkrgakvkilrqesywykgtgsvvavdqdpntrypvvvrfnkvnyanvstnnyald
eveevk

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6yezF (F:)
diagltpckdskqfakrekqsikklesslklyapdsapalainatiektkrrfdnygkqg
llcgadglphlivsgdqrhwgefitpgilflyiagwigwvgrsyliairddkkptqkeii
idvplatglvfrgfswpiaayrellngelvakdv

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6yezJ (J:)
mrdlktylsvapvastlwfaalagllieinrffpdaltfpff

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6yezL (L:)
yqvvqpingdpfigsletpvtssplvawylsnlpgyrtavnpllrgievglahgfllvgp
fvkagplrnteiagqagslaagglvvilsicltiygissfnegdpstapsltltgrkkqp
dqlqtadgwakftggfffggisgvtwaffllyvldlpyf

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6yezN (N:)
asykvklvtpdgtqefecpsdvyildhaeevgidlpyscragscsscagkvvggevdqsd
gsflddeqieagfvltcvayptsdvviethkeedlta

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6yezP (P:)
vevllgasdgglafvpsslevsagetivfknnagfphnvvfdedeipagvdaskismpee
dllnapgetysvkldakgtykfycsphqgagmvgqvtvn