PDB entry 6xdk

View 6xdk on RCSB PDB site
Description: Crystal structure of Phosphoserine aminotransferase (SerC) from Stenotrophomonas maltophilia K279a
Class: transferase
Keywords: SSGCID, Stenotrophomonas maltophilia, Phosphoserine aminotransferase, serC, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, TRANSFERASE
Deposited on 2020-06-10, released 2020-06-24
The last revision prior to the SCOPe 2.07 freeze date was dated 2020-06-24, with a file datestamp of 2020-06-19.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: N/A
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: phosphoserine aminotransferase
    Species: Stenotrophomonas maltophilia (strain K279a) [TaxId:522373]
    Gene: serC, Smlt3098
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6xdka_
  • Chain 'B':
    Compound: phosphoserine aminotransferase
    Species: Stenotrophomonas maltophilia (strain K279a) [TaxId:522373]
    Gene: serC, Smlt3098
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6xdkb_
  • Chain 'C':
    Compound: phosphoserine aminotransferase
    Species: Stenotrophomonas maltophilia (strain K279a) [TaxId:522373]
    Gene: serC, Smlt3098
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6xdkc_
  • Chain 'D':
    Compound: phosphoserine aminotransferase
    Species: Stenotrophomonas maltophilia (strain K279a) [TaxId:522373]
    Gene: serC, Smlt3098
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6xdkd_
  • Heterogens: PLP, CL, EDO, CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >6xdkA (A:)
    mahhhhhhmtrafnfsagpatlpesvlrqaqaemldwhgsgasivemshrgaefmsvaae
    aeadlrrlldipddyavlflsggattqqaliplnfaapgqradyvvsghwgktavkqagv
    yvdvniaasseangyrelparadwqlsrdaayvhitanetihgvefrdvpdtgnvpliad
    fsssiasepldvrrygviyagaqknlgpvgvavmiirrdllersgqpradifdyrshvar
    dsmlntpptwnwylaglvfkwmlaeggvtefakrnaakaalvygaidgsggfyrnevaya
    arsrmnipfflpdaeldarfvaeakaagllalkghkvvggiraslynamplagaealvaf
    madfqqrhg
    

    Sequence, based on observed residues (ATOM records): (download)
    >6xdkA (A:)
    afnfsagpatlpesvlrqaqaemldwhgsgasivemshrgaefmsvaaeaeadlrrlldi
    pddyavlflsggattqqaliplnfaapgqradyvvsghwgktavkqagvyvdvniaasse
    angyrelparadwqlsrdaayvhitanetihgvefrdvpdtgnvpliadfsssiasepld
    vrrygviyagaqknlgpvgvavmiirrdllersgqpradifdyrshvardsmlntpptwn
    wylaglvfkwmlaeggvtefakrnaakaalvygaidgsggfyrnevayaarsrmnipffl
    pdaeldarfvaeakaagllalkghkvvggiraslynamplagaealvafmadfqqrhg
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >6xdkB (B:)
    mahhhhhhmtrafnfsagpatlpesvlrqaqaemldwhgsgasivemshrgaefmsvaae
    aeadlrrlldipddyavlflsggattqqaliplnfaapgqradyvvsghwgktavkqagv
    yvdvniaasseangyrelparadwqlsrdaayvhitanetihgvefrdvpdtgnvpliad
    fsssiasepldvrrygviyagaqknlgpvgvavmiirrdllersgqpradifdyrshvar
    dsmlntpptwnwylaglvfkwmlaeggvtefakrnaakaalvygaidgsggfyrnevaya
    arsrmnipfflpdaeldarfvaeakaagllalkghkvvggiraslynamplagaealvaf
    madfqqrhg
    

    Sequence, based on observed residues (ATOM records): (download)
    >6xdkB (B:)
    rafnfsagpatlpesvlrqaqaemldwhgsgasivemshrgaefmsvaaeaeadlrrlld
    ipddyavlflsggattqqaliplnfaapgqradyvvsghwgktavkqagvyvdvniaass
    eangyrelparadwqlsrdaayvhitanetihgvefrdvpdtgnvpliadfsssiasepl
    dvrrygviyagaqknlgpvgvavmiirrdllersgqpradifdyrshvarntpptwnwyl
    aglvfkwmlaeggvtefakrnaakaalvygaidgsggfyrnevayaarsrmnipfflpda
    eldarfvaeakaagllalkghkvvggiraslynamplagaealvafmadfqqrhg
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >6xdkC (C:)
    mahhhhhhmtrafnfsagpatlpesvlrqaqaemldwhgsgasivemshrgaefmsvaae
    aeadlrrlldipddyavlflsggattqqaliplnfaapgqradyvvsghwgktavkqagv
    yvdvniaasseangyrelparadwqlsrdaayvhitanetihgvefrdvpdtgnvpliad
    fsssiasepldvrrygviyagaqknlgpvgvavmiirrdllersgqpradifdyrshvar
    dsmlntpptwnwylaglvfkwmlaeggvtefakrnaakaalvygaidgsggfyrnevaya
    arsrmnipfflpdaeldarfvaeakaagllalkghkvvggiraslynamplagaealvaf
    madfqqrhg
    

    Sequence, based on observed residues (ATOM records): (download)
    >6xdkC (C:)
    rafnfsagpatlpesvlrqaqaemldwhgsgasivemshrgaefmsvaaeaeadlrrlld
    ipddyavlflsggattqqaliplnfaapgqradyvvsghwgktavkqagvyvdvniaass
    eangyrelparadwqlsrdaayvhitanetihgvefrdvpdtgnvpliadfsssiasepl
    dvrrygviyagaqknlgpvgvavmiirrdllersgqpradifdyrshvarntpptwnwyl
    aglvfkwmlaeggvtefakrnaakaalvygaidgsggfyrnevayaarsrmnipfflpda
    eldarfvaeakaagllalkghkvvggiraslynamplagaealvafmadfqqrhg
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >6xdkD (D:)
    mahhhhhhmtrafnfsagpatlpesvlrqaqaemldwhgsgasivemshrgaefmsvaae
    aeadlrrlldipddyavlflsggattqqaliplnfaapgqradyvvsghwgktavkqagv
    yvdvniaasseangyrelparadwqlsrdaayvhitanetihgvefrdvpdtgnvpliad
    fsssiasepldvrrygviyagaqknlgpvgvavmiirrdllersgqpradifdyrshvar
    dsmlntpptwnwylaglvfkwmlaeggvtefakrnaakaalvygaidgsggfyrnevaya
    arsrmnipfflpdaeldarfvaeakaagllalkghkvvggiraslynamplagaealvaf
    madfqqrhg
    

    Sequence, based on observed residues (ATOM records): (download)
    >6xdkD (D:)
    rafnfsagpatlpesvlrqaqaemldwhgsgasivemshrgaefmsvaaeaeadlrrlld
    ipddyavlflsggattqqaliplnfaapgqradyvvsghwgktavkqagvyvdvniaass
    eangyrelparadwqlsrdaayvhitanetihgvefrdvpdtgnvpliadfsssiasepl
    dvrrygviyagaqknlgpvgvavmiirrdllersgqpradifdyrshvardsmlntpptw
    nwylaglvfkwmlaeggvtefakrnaakaalvygaidgsggfyrnevayaarsrmnipff
    lpdaeldarfvaeakaagllalkghkvvggiraslynamplagaealvafmadfqqrhg