PDB entry 6wit
View 6wit on RCSB PDB site
Description: Crystal structure of NHP D15.SD7 Fab in complex with 16055 V1V2 1FD6 scaffold
Class: antiviral protein/immune system
Keywords: Fab, HIV, V1V2, Complex, Antibody, Scaffold, ANTIVIRAL PROTEIN-IMMUNE SYSTEM complex
Deposited on
2020-04-10, released
2021-04-14
The last revision prior to the SCOPe 2.08 freeze date was dated
2021-04-14, with a file datestamp of
2021-04-09.
Experiment type: XRAY
Resolution: 2.79 Å
R-factor: N/A
AEROSPACI score: 0.25
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: NHP GN1-SD7 Fab Heavy Chain
Species: Macaca mulatta [TaxId:9544]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6wita_ - Chain 'B':
Compound: NHP GN1-SD7 Fab Light Chain
Species: Macaca mulatta [TaxId:9544]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6witb1, d6witb2 - Chain 'C':
Compound: 16055 V1V2 1FD6 Scaffold
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: NHP GN1-SD7 Fab Heavy Chain
Species: Macaca mulatta [TaxId:9544]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6with_ - Chain 'I':
Compound: 16055 V1V2 1FD6 Scaffold
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'L':
Compound: NHP GN1-SD7 Fab Light Chain
Species: Macaca mulatta [TaxId:9544]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6witl1, d6witl2 - Heterogens: NAG, SO4, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>6witA (A:)
evqlvqsgaevkkpgasmkisckasgytftdyslhwvrqtpgkglewmgrvdpedgeshy
aqkfqdrvtitadtstdtaymevrslrsedtamyycatdhredgptyfsgvqwvpfrfwg
qgvlvtvssastkgpsvfplapsxxxxxxgtaalgclvkdyfpepvtvswnsgaltsgvh
tfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepksc
Sequence, based on observed residues (ATOM records): (download)
>6witA (A:)
evqlvqsgaevkkpgasmkisckasgytftdyslhwvrqtpgkglewmgrvdpedgeshy
aqkfqdrvtitadtstdtaymevrslrsedtamyycatdhredgptyfsgvqwvpfrfwg
qgvlvtvssastkgpsvfplapsgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavl
qssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepksc
- Chain 'B':
Sequence, based on SEQRES records: (download)
>6witB (B:)
vvftqphsvsgspgqtvtisctrssgsidseyvqwyqqrpgsapttliykdnqrpsgvpd
rfsgsidsssnsaslaisglksedeadyycqspdgrynrvfgggtrltvlgqpkaapsvt
lfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaass
ylsltpeqwkshrsyscqvthegstvektvapt
Sequence, based on observed residues (ATOM records): (download)
>6witB (B:)
vftqphsvsgspgqtvtisctrssgsidseyvqwyqqrpgsapttliykdnqrpsgvpdr
fsgsidsssnsaslaisglkedeadyycqspdgrynrvfggtrltvlgqpkaapsvtlfp
psseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaassyls
ltpeqwkshrsyscqvthegstvektvapt
- Chain 'C':
No sequence available.
- Chain 'H':
Sequence, based on SEQRES records: (download)
>6witH (H:)
evqlvqsgaevkkpgasmkisckasgytftdyslhwvrqtpgkglewmgrvdpedgeshy
aqkfqdrvtitadtstdtaymevrslrsedtamyycatdhredgptyfsgvqwvpfrfwg
qgvlvtvssastkgpsvfplapsxxxxxxgtaalgclvkdyfpepvtvswnsgaltsgvh
tfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepksc
Sequence, based on observed residues (ATOM records): (download)
>6witH (H:)
evqlvqsgaevkkpgasmkisckasgytftdyslhwvrqtpgkglewmgrvdpedgeshy
aqkfqdrvtitadtstdtaymevrslrsedtamyycatdhredgptyfsgvqwvpfrfwg
qgvlvtvssastkgpsvfplapsgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavl
qssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvep
- Chain 'I':
No sequence available.
- Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
>6witL (L:)
vvftqphsvsgspgqtvtisctrssgsidseyvqwyqqrpgsapttliykdnqrpsgvpd
rfsgsidsssnsaslaisglksedeadyycqspdgrynrvfgggtrltvlgqpkaapsvt
lfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaass
ylsltpeqwkshrsyscqvthegstvektvapt