PDB entry 6wit

View 6wit on RCSB PDB site
Description: Crystal structure of NHP D15.SD7 Fab in complex with 16055 V1V2 1FD6 scaffold
Class: antiviral protein/immune system
Keywords: Fab, HIV, V1V2, Complex, Antibody, Scaffold, ANTIVIRAL PROTEIN-IMMUNE SYSTEM complex
Deposited on 2020-04-10, released 2021-04-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-04-14, with a file datestamp of 2021-04-09.
Experiment type: XRAY
Resolution: 2.79 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: NHP GN1-SD7 Fab Heavy Chain
    Species: Macaca mulatta [TaxId:9544]
    Database cross-references and differences (RAF-indexed):
    • PDB 6WIT (0-231)
    Domains in SCOPe 2.08: d6wita_
  • Chain 'B':
    Compound: NHP GN1-SD7 Fab Light Chain
    Species: Macaca mulatta [TaxId:9544]
    Database cross-references and differences (RAF-indexed):
    • PDB 6WIT (Start-212)
    Domains in SCOPe 2.08: d6witb1, d6witb2
  • Chain 'C':
    Compound: 16055 V1V2 1FD6 Scaffold
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6WIT (0-128)
  • Chain 'H':
    Compound: NHP GN1-SD7 Fab Heavy Chain
    Species: Macaca mulatta [TaxId:9544]
    Database cross-references and differences (RAF-indexed):
    • PDB 6WIT (0-End)
    Domains in SCOPe 2.08: d6with_
  • Chain 'I':
    Compound: 16055 V1V2 1FD6 Scaffold
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6WIT
  • Chain 'L':
    Compound: NHP GN1-SD7 Fab Light Chain
    Species: Macaca mulatta [TaxId:9544]
    Database cross-references and differences (RAF-indexed):
    • PDB 6WIT (0-212)
    Domains in SCOPe 2.08: d6witl1, d6witl2
  • Heterogens: NAG, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >6witA (A:)
    evqlvqsgaevkkpgasmkisckasgytftdyslhwvrqtpgkglewmgrvdpedgeshy
    aqkfqdrvtitadtstdtaymevrslrsedtamyycatdhredgptyfsgvqwvpfrfwg
    qgvlvtvssastkgpsvfplapsxxxxxxgtaalgclvkdyfpepvtvswnsgaltsgvh
    tfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepksc
    

    Sequence, based on observed residues (ATOM records): (download)
    >6witA (A:)
    evqlvqsgaevkkpgasmkisckasgytftdyslhwvrqtpgkglewmgrvdpedgeshy
    aqkfqdrvtitadtstdtaymevrslrsedtamyycatdhredgptyfsgvqwvpfrfwg
    qgvlvtvssastkgpsvfplapsgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavl
    qssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepksc
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >6witB (B:)
    vvftqphsvsgspgqtvtisctrssgsidseyvqwyqqrpgsapttliykdnqrpsgvpd
    rfsgsidsssnsaslaisglksedeadyycqspdgrynrvfgggtrltvlgqpkaapsvt
    lfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaass
    ylsltpeqwkshrsyscqvthegstvektvapt
    

    Sequence, based on observed residues (ATOM records): (download)
    >6witB (B:)
    vftqphsvsgspgqtvtisctrssgsidseyvqwyqqrpgsapttliykdnqrpsgvpdr
    fsgsidsssnsaslaisglkedeadyycqspdgrynrvfggtrltvlgqpkaapsvtlfp
    psseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaassyls
    ltpeqwkshrsyscqvthegstvektvapt
    

  • Chain 'C':
    No sequence available.

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >6witH (H:)
    evqlvqsgaevkkpgasmkisckasgytftdyslhwvrqtpgkglewmgrvdpedgeshy
    aqkfqdrvtitadtstdtaymevrslrsedtamyycatdhredgptyfsgvqwvpfrfwg
    qgvlvtvssastkgpsvfplapsxxxxxxgtaalgclvkdyfpepvtvswnsgaltsgvh
    tfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepksc
    

    Sequence, based on observed residues (ATOM records): (download)
    >6witH (H:)
    evqlvqsgaevkkpgasmkisckasgytftdyslhwvrqtpgkglewmgrvdpedgeshy
    aqkfqdrvtitadtstdtaymevrslrsedtamyycatdhredgptyfsgvqwvpfrfwg
    qgvlvtvssastkgpsvfplapsgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavl
    qssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvep
    

  • Chain 'I':
    No sequence available.

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download)
    >6witL (L:)
    vvftqphsvsgspgqtvtisctrssgsidseyvqwyqqrpgsapttliykdnqrpsgvpd
    rfsgsidsssnsaslaisglksedeadyycqspdgrynrvfgggtrltvlgqpkaapsvt
    lfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaass
    ylsltpeqwkshrsyscqvthegstvektvapt