PDB entry 6wds

View 6wds on RCSB PDB site
Description: Enterovirus D68 in complex with human monoclonal antibody EV68-159
Class: virus/immune system
Keywords: virus, enterovirus, antibody, Structural Genomics, Center for Structural Genomics of Infectious Diseases, CSGID, VIRUS-IMMUNE SYSTEM complex
Deposited on 2020-04-01, released 2020-07-15
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-15, with a file datestamp of 2020-07-10.
Experiment type: EM
Resolution: 2.9 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: viral protein 1
    Species: Enterovirus D68 [TaxId:42789]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6wdsa_
  • Chain 'B':
    Compound: viral protein 2
    Species: Enterovirus D68 [TaxId:42789]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: viral protein 3
    Species: Enterovirus D68 [TaxId:42789]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6wdsc_
  • Chain 'D':
    Compound: viral protein 4
    Species: Enterovirus D68 [TaxId:42789]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: EV68-159 heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6WDS
    Domains in SCOPe 2.08: d6wdsh_
  • Chain 'L':
    Compound: EV68-159 light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6WDS
    Domains in SCOPe 2.08: d6wdsl1, d6wdsl2

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6wdsA (A:)
iesiiktatdtvkseinaelgvvpslnavetgatsntepeeaiqtrtvinqhgvsetlve
nflsraalvskrsfeykdhtsstaradknffkwtintrsfvqlrrklelftylrfdaeit
ilttvavngsgnntyvglpdltlqamfvptgaltpekqdsfhwqsgsnasvffkisdppa
ritipfmcinsaysvfydgfagfeknglyginpadtignlcvrivnehqpvgftvtvrvy
mkpkhikawaprpprtlpymsiananykgkerapnalsaiignrdsvktmphnivnt

    Sequence, based on observed residues (ATOM records): (download) 
    >6wdsA (A:)
esiiktatdtvkseinaelgvvpslnavetgatsntepeeaiqtrtvinqhgvsetlven
flsraalvskrsfeykdhtsstaradknffkwtintrsfvqlrrklelftylrfdaeiti
lttvavngntyvglpdltlqamfvptgaltpekqdsfhwqsgsnasvffkisdppariti
pfmcinsaysvfydgfagfeknglyginpadtignlcvrivnehqpvgftvtvrvymkpk
hikawaprpprtlpymsiananykgkerapnalsaiignrdsvktmphniv

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6wdsC (C:)
gvptyllpgsgqflttddhssapalpcfnptpemhipgqvrnmlevvqvesmmeinntes
avgmerlkvdisaltdvdqllfnipldiqldgplrntlvgnisryythwsgslemtfmfc
gsfmaagklilcytppggscpttretamlgthivwdfglqssvtliipwisgshyrmfnn
dakstnanvgyvtcfmqtnlivpsessdtcsligfiaakddfslrlmrdspdigqldhlh
aaeaayq

    Sequence, based on observed residues (ATOM records): (download) 
    >6wdsC (C:)
gvptyllpgsgqflttddhssapalpcfnptpemhipgqvrnmlevvqvesmmeinntes
avgmerlkvdisaltdvdqllfnipldiqldgplrntlvgnisryythwsgslemtfmfc
gsfmaagklilcytppggscpttretamlgthivwdfglqssvtliipwisgshyrmfnn
dakstnanvgyvtcfmqtnlivpsessdtcsligfiaakddfslrlmrdspdigqldhlh
aaeaa

  • Chain 'D':
    No sequence available.

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6wdsH (H:)
evqlvesggglvkpgglrlscaasgftfstyimtwvrqapgrglewvssistssvytfya
dslkgrftisrdnaknsvylqmnslraddtavyycareegfraynlywgqgtlvtvss

    Sequence, based on observed residues (ATOM records): (download) 
    >6wdsH (H:)
vqlvesggglvkpgglrlscaasgftfstyimtwvrqapgrglewvssistssvytfyad
slkgrftisrdnaknsvylqmnslraddtavyycareegfraynlywgqgtlvtv

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >6wdsL (L:)
qsvltqppsasgtpgqrvtiscsgsssnieynyvywyqkfpgtapklliyknnqrpsgvp
drfsgsksgtsaslaisglrsedegdyycaawddilsgvvfgggtkltvl

    Sequence, based on observed residues (ATOM records): (download) 
    >6wdsL (L:)
svltqppsasgtpgqrvtiscsgsssnieynyvywyqkfpgtapklliyknnqrpsgvpd
rfsgsksgtsaslaisglrsedegdyycaawddilsgvvfgggtkl