PDB entry 6w9a

View 6w9a on RCSB PDB site
Description: RNF12 RING domain in complex with Ube2e2
Class: ligase
Keywords: RING E3 ligase, Ubiquitin, Ubiquitin conjugating enzyme, X-chromosome inactivation, RING, LIGASE
Deposited on 2020-03-22, released 2020-05-20
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-01, with a file datestamp of 2020-06-26.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ubiquitin-conjugating enzyme E2 E2
    Species: Homo sapiens [TaxId:9606]
    Gene: UBE2E2, UBCH8
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6w9aa_
  • Chain 'B':
    Compound: E3 ubiquitin-protein ligase RLIM
    Species: Homo sapiens [TaxId:9606]
    Gene: RLIM, RNF12
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Ubiquitin-conjugating enzyme E2 E2
    Species: Homo sapiens [TaxId:9606]
    Gene: UBE2E2, UBCH8
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6w9ac_
  • Chain 'D':
    Compound: E3 ubiquitin-protein ligase RLIM
    Species: Homo sapiens [TaxId:9606]
    Gene: RLIM, RNF12
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GOL, ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6w9aA (A:)
gplgsepereqvqpkkkegkissktaaklstsakriqkelaeitldpppncsagpkgdni
yewrstilgppgsvyeggvfflditfspdypfkppkvtfrtriyhcninsqgvicldilk
dnwspaltiskvllsicslltdcnpadplvgsiatqymtnraehdrmarqwtkryat

    Sequence, based on observed residues (ATOM records): (download) 
    >6w9aA (A:)
ktaaklstsakriqkelaeitldpppncsagpkgdniyewrstilgppgsvyeggvffld
itfspdypfkppkvtfrtriyhcninsqgvicldilkdnwspaltiskvllsicslltdc
npadplvgsiatqymtnraehdrmarqwtkryat

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6w9aC (C:)
gplgsepereqvqpkkkegkissktaaklstsakriqkelaeitldpppncsagpkgdni
yewrstilgppgsvyeggvfflditfspdypfkppkvtfrtriyhcninsqgvicldilk
dnwspaltiskvllsicslltdcnpadplvgsiatqymtnraehdrmarqwtkryat

    Sequence, based on observed residues (ATOM records): (download) 
    >6w9aC (C:)
ktaaklstsakriqkelaeitldpppncsagpkgdniyewrstilgppgsvyeggvffld
itfspdypfkppkvtfrtriyhcninsqgvicldilkdnwspaltiskvllsicslltdc
npadplvgsiatqymtnraehdrmarqwtkryat

  • Chain 'D':
    No sequence available.