PDB entry 6ul4

View 6ul4 on RCSB PDB site
Description: Crystal structure of BoNT/B receptor-binding domain in complex with VHH JLO-G11
Class: toxin/antitoxin
Keywords: Botulinum neurotoxin (BoNT), VHH, receptor-binding domain, TOXIN, ANTITOXIN, TOXIN-ANTITOXIN complex
Deposited on 2019-10-06, released 2020-03-04
The last revision prior to the SCOPe 2.07 freeze date was dated 2020-03-04, with a file datestamp of 2020-02-28.
Experiment type: XRAY
Resolution: 3.18 Å
R-factor: N/A
AEROSPACI score: 0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: botulinum neurotoxin type b
    Species: Clostridium botulinum [TaxId:1491]
    Gene: botB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6ul4a1, d6ul4a2
  • Chain 'B':
    Compound: vhh jlo-g11
    Species: Vicugna pacos [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 6UL4
    Domains in SCOPe 2.07: d6ul4b_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6ul4A (A:)
gplgseilnniilnlrykdnnlidlsgygakvevydgvelndknqfkltssanskirvtq
nqniifnsvfldfsvsfwiripkykndgiqnyihneytiincmknnsgwkisirgnriiw
tlidingktksvffeynirediseyinrwffvtitnnlnnakiyingklesntdikdire
viangeiifkldgdidrtqfiwmkyfsifntelsqsnieerykiqsyseylkdfwgnplm
ynkeyymfnagnknsyiklkkdspvgeiltrskynqnskyinyrdlyigekfiirrksns
qsinddivrkedyiyldffnlnqewrvytykyfkkeeeklflapisdsdefyntiqikey
deqptyscqllfkkdeestdeigligihrfyesgivfeeykdyfciskwylkevkrkpyn
lklgcnwqfipkdegwte

    Sequence, based on observed residues (ATOM records): (download) 
    >6ul4A (A:)
lnniilnlrykdnnlidlsgygakvevydgvelndknqfkltssanskirvtqnqniifn
svfldfsvsfwiripkykndgiqnyihneytiincmknnsgwkisirgnriiwtliding
ktksvffeynirediseyinrwffvtitnnlnnakiyingklesntdikdireviangei
ifkldgdidrtqfiwmkyfsifntelsqsnieerykiqsyseylkdfwgnplmynkeyym
fnagnknsyiklkkdspvgeiltrskynqnskyinyrdlyigekfiirrkssinddivrk
edyiyldffnlnqewrvytykyfkkeeeklflapisdsdefyntiqikeydeqptyscql
lfkkdeestdeigligihrfyesgivfeeykdyfciskwylkevkrkpynlklgcnwqfi
pkdegwte

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6ul4B (B:)
mhhhhhhmasmtggqqmgrgsqvqlaesggglvqpggslrlsceasgfhlehfavgwfrq
apgkeregvscisasgdsttyadsvkgrstiskdnaknavylqmdslrpedtgdyycaas
hfsvcgknirkieyrywgqgtpvtvssepktpkpq

    Sequence, based on observed residues (ATOM records): (download) 
    >6ul4B (B:)
vqlaesggglvqpggslrlsceasgfhlehfavgwfrqapgkeregvscisasgdsttya
dsvkgrstiskdnaknavylqmdslrpedtgdyycaashfsvcgknirkieyrywgqgtp
vtvss