PDB entry 6tnp

View 6tnp on RCSB PDB site
Description: Crystal structure of the ScFv-5E5 in complex with a Tn glycopeptide
Class: immune system
Keywords: Antibody, ScFv, 5E5, anti-Tn antibody, MUC1, cancer, IMMUNE SYSTEM
Deposited on 2019-12-09, released 2020-11-18
The last revision prior to the SCOPe 2.07 freeze date was dated 2020-12-02, with a file datestamp of 2020-11-27.
Experiment type: XRAY
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Light chain of our ScFv-5E5
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6TNP (Start-112)
    Domains in SCOPe 2.07: d6tnpa_
  • Chain 'B':
    Compound: Heavy chain of our ScFv-5E5
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6TNP (0-End)
    Domains in SCOPe 2.07: d6tnpb1, d6tnpb2
  • Chain 'C':
    Compound: Light chain of our ScFv-5E5
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6TNP (Start-112)
    Domains in SCOPe 2.07: d6tnpc_
  • Chain 'D':
    Compound: Heavy chain of our ScFv-5E5
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6TNP (0-End)
    Domains in SCOPe 2.07: d6tnpd1, d6tnpd2
  • Chain 'E':
    Compound: Light chain of our ScFv-5E5
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6TNP (Start-112)
    Domains in SCOPe 2.07: d6tnpe_
  • Chain 'F':
    Compound: Heavy chain of our ScFv-5E5
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6TNP (0-End)
    Domains in SCOPe 2.07: d6tnpf1, d6tnpf2
  • Chain 'G':
    Compound: Light chain of our ScFv-5E5
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6TNP (Start-112)
    Domains in SCOPe 2.07: d6tnpg_
  • Chain 'H':
    Compound: Heavy chain of our ScFv-5E5
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6TNP (0-End)
    Domains in SCOPe 2.07: d6tnph1, d6tnph2
  • Chain 'I':
    Compound: Heavy chain of our ScFv-5E5
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6TNP (0-End)
    Domains in SCOPe 2.07: d6tnpi1, d6tnpi2
  • Chain 'J':
    Compound: Light chain of our ScFv-5E5
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6TNP (Start-112)
    Domains in SCOPe 2.07: d6tnpj_
  • Chain 'K':
    Compound: Heavy chain of our ScFv-5E5
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6TNP (0-End)
    Domains in SCOPe 2.07: d6tnpk1, d6tnpk2
  • Chain 'L':
    Compound: Light chain of our ScFv-5E5
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6TNP (Start-112)
    Domains in SCOPe 2.07: d6tnpl_
  • Heterogens: NO8, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >6tnpA (A:)
    elvmtqspssltvtagekvtmickssqsllnsgdqknyltwyqqkpgqppkllifwastr
    esgvpdrftgsgsgtdftltissvqaedlavyycqndysypltfgagtklelk
    

    Sequence, based on observed residues (ATOM records): (download)
    >6tnpA (A:)
    lvmtqspssltvtagekvtmickssqsllnsgdqknyltwyqqkpgqppkllifwastre
    sgvpdrftgsgsgtdftltissvqaedlavyycqndysypltfgagtklelk
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >6tnpB (B:)
    qvqlqqsdaelvkpgssvkisckasgytftdhaihwvkqkpeqglewighfspgntdiky
    ndkfkgkatltvdrssstaymqlnsltsedsavyfcktstfffdywgqgttltvss
    

    Sequence, based on observed residues (ATOM records): (download)
    >6tnpB (B:)
    qvqlqqsdaelvkpgssvkisckasgytftdhaihwvkqkpeqglewighfspgntdiky
    ndkfkgkatltvdrssstaymqlnsltsedsavyfcktstfffdywgqgttltvs
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >6tnpC (C:)
    elvmtqspssltvtagekvtmickssqsllnsgdqknyltwyqqkpgqppkllifwastr
    esgvpdrftgsgsgtdftltissvqaedlavyycqndysypltfgagtklelk
    

    Sequence, based on observed residues (ATOM records): (download)
    >6tnpC (C:)
    lvmtqspssltvtagekvtmickssqsllnsgdqknyltwyqqkpgqppkllifwastre
    sgvpdrftgsgsgtdftltissvqaedlavyycqndysypltfgagtklelk
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >6tnpD (D:)
    qvqlqqsdaelvkpgssvkisckasgytftdhaihwvkqkpeqglewighfspgntdiky
    ndkfkgkatltvdrssstaymqlnsltsedsavyfcktstfffdywgqgttltvss
    

    Sequence, based on observed residues (ATOM records): (download)
    >6tnpD (D:)
    qvqlqqsdaelvkpgssvkisckasgytftdhaihwvkqkpeqglewighfspgntdiky
    ndkfkgkatltvdrssstaymqlnsltsedsavyfcktstfffdywgqgttltvs
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >6tnpE (E:)
    elvmtqspssltvtagekvtmickssqsllnsgdqknyltwyqqkpgqppkllifwastr
    esgvpdrftgsgsgtdftltissvqaedlavyycqndysypltfgagtklelk
    

    Sequence, based on observed residues (ATOM records): (download)
    >6tnpE (E:)
    lvmtqspssltvtagekvtmickssqsllnsgdqknyltwyqqkpgqppkllifwastre
    sgvpdrftgsgsgtdftltissvqaedlavyycqndysypltfgagtklelk
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >6tnpF (F:)
    qvqlqqsdaelvkpgssvkisckasgytftdhaihwvkqkpeqglewighfspgntdiky
    ndkfkgkatltvdrssstaymqlnsltsedsavyfcktstfffdywgqgttltvss
    

    Sequence, based on observed residues (ATOM records): (download)
    >6tnpF (F:)
    qvqlqqsdaelvkpgssvkisckasgytftdhaihwvkqkpeqglewighfspgntdiky
    ndkfkgkatltvdrssstaymqlnsltsedsavyfcktstfffdywgqgttltvs
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >6tnpG (G:)
    elvmtqspssltvtagekvtmickssqsllnsgdqknyltwyqqkpgqppkllifwastr
    esgvpdrftgsgsgtdftltissvqaedlavyycqndysypltfgagtklelk
    

    Sequence, based on observed residues (ATOM records): (download)
    >6tnpG (G:)
    lvmtqspssltvtagekvtmickssqsllnsgdqknyltwyqqkpgqppkllifwastre
    sgvpdrftgsgsgtdftltissvqaedlavyycqndysypltfgagtklelk
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >6tnpH (H:)
    qvqlqqsdaelvkpgssvkisckasgytftdhaihwvkqkpeqglewighfspgntdiky
    ndkfkgkatltvdrssstaymqlnsltsedsavyfcktstfffdywgqgttltvss
    

    Sequence, based on observed residues (ATOM records): (download)
    >6tnpH (H:)
    qvqlqqsdaelvkpgssvkisckasgytftdhaihwvkqkpeqglewighfspgntdiky
    ndkfkgkatltvdrssstaymqlnsltsedsavyfcktstfffdywgqgttltvs
    

  • Chain 'I':
    Sequence, based on SEQRES records: (download)
    >6tnpI (I:)
    qvqlqqsdaelvkpgssvkisckasgytftdhaihwvkqkpeqglewighfspgntdiky
    ndkfkgkatltvdrssstaymqlnsltsedsavyfcktstfffdywgqgttltvss
    

    Sequence, based on observed residues (ATOM records): (download)
    >6tnpI (I:)
    qvqlqqsdaelvkpgssvkisckasgytftdhaihwvkqkpeqglewighfikyndkfkg
    katltvdrssstaymqlnsltsedsavyfcktstfffdywgqgttltvs
    

  • Chain 'J':
    Sequence, based on SEQRES records: (download)
    >6tnpJ (J:)
    elvmtqspssltvtagekvtmickssqsllnsgdqknyltwyqqkpgqppkllifwastr
    esgvpdrftgsgsgtdftltissvqaedlavyycqndysypltfgagtklelk
    

    Sequence, based on observed residues (ATOM records): (download)
    >6tnpJ (J:)
    lvmtqspssltvtagekvtmickssqsllnsgdqknyltwyqqkpgqppkllifwastre
    sgvpdrftgsgsgtdftltissvqaedlavyycqndysypltfgagtklelk
    

  • Chain 'K':
    Sequence, based on SEQRES records: (download)
    >6tnpK (K:)
    qvqlqqsdaelvkpgssvkisckasgytftdhaihwvkqkpeqglewighfspgntdiky
    ndkfkgkatltvdrssstaymqlnsltsedsavyfcktstfffdywgqgttltvss
    

    Sequence, based on observed residues (ATOM records): (download)
    >6tnpK (K:)
    qvqlqqsdaelvkpgssvkisckasgytftdaihwvkqkpeqglewighyndkfkgkatl
    tvdrssstaymqlnsltsedsavyfcktsdywgqgttltvs
    

  • Chain 'L':
    Sequence, based on SEQRES records: (download)
    >6tnpL (L:)
    elvmtqspssltvtagekvtmickssqsllnsgdqknyltwyqqkpgqppkllifwastr
    esgvpdrftgsgsgtdftltissvqaedlavyycqndysypltfgagtklelk
    

    Sequence, based on observed residues (ATOM records): (download)
    >6tnpL (L:)
    lvmtqspssltvtagekvtmickssqsllnsgdqknyltwyqqkpgqppkllifwastre
    sgvpdrftgsgsgtdftltissvqaedlavyycqndysypltfgagtklelk