PDB entry 6rer

View 6rer on RCSB PDB site
Description: Cryo-EM structure of Polytomella F-ATP synthase, Rotary substate 3B, focussed refinement of F1 head and rotor
Class: proton transport
Keywords: mitochondrial ATP synthase dimer flexible coupling cryoEM, PROTON TRANSPORT
Deposited on 2019-04-12, released 2019-07-03
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-09-30, with a file datestamp of 2020-09-25.
Experiment type: EM
Resolution: 2.9 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: Mitochondrial ATP synthase subunit c
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • Uniprot D7P7X5 (Start-126)
• Chain 'B':
  Compound: Mitochondrial ATP synthase subunit c
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • Uniprot D7P7X5 (Start-126)
• Chain 'C':
  Compound: Mitochondrial ATP synthase subunit c
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • Uniprot D7P7X5 (Start-126)
• Chain 'D':
  Compound: Mitochondrial ATP synthase subunit c
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • Uniprot D7P7X5 (Start-126)
• Chain 'E':
  Compound: Mitochondrial ATP synthase subunit c
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • Uniprot D7P7X5 (Start-126)
• Chain 'F':
  Compound: Mitochondrial ATP synthase subunit c
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • Uniprot D7P7X5 (Start-126)
• Chain 'G':
  Compound: Mitochondrial ATP synthase subunit c
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • Uniprot D7P7X5 (Start-126)
• Chain 'H':
  Compound: Mitochondrial ATP synthase subunit c
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • Uniprot D7P7X5 (Start-126)
• Chain 'I':
  Compound: Mitochondrial ATP synthase subunit c
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • Uniprot D7P7X5 (Start-126)
• Chain 'J':
  Compound: Mitochondrial ATP synthase subunit c
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • Uniprot D7P7X5 (Start-126)
• Chain 'P':
  Compound: Mitochondrial ATP synthase subunit OSCP
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • Uniprot D8V7I1
• Chain 'Q':
  Compound: epsilon: Polytomella F-ATP synthase epsilon subunit
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • PDB 6RER (Start-73)
• Chain 'R':
  Compound: Mitochondrial ATP synthase subunit delta
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • Uniprot D7P7X6 (Start-198)
• Chain 'S':
  Compound: ATP synthase gamma chain, mitochondrial
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q4LDE7
  Domains in SCOPe 2.08: d6rers_
• Chain 'T':
  Compound: ATP synthase subunit alpha
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • Uniprot A0ZW40 (Start-561)
    • conflict (265)
  Domains in SCOPe 2.08: d6rert1, d6rert2, d6rert3
• Chain 'U':
  Compound: ATP synthase subunit alpha
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • Uniprot A0ZW40 (Start-561)
    • conflict (265)
• Chain 'V':
  Compound: ATP synthase subunit alpha
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • Uniprot A0ZW40 (Start-561)
    • conflict (265)
• Chain 'X':
  Compound: ATP synthase subunit beta
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • Uniprot A0ZW41 (Start-573)
    • conflict (349)
    • conflict (386)
• Chain 'Y':
  Compound: ATP synthase subunit beta
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • Uniprot A0ZW41
    • conflict (349)
    • conflict (386)
• Chain 'Z':
  Compound: ATP synthase subunit beta
  Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
  Database cross-references and differences (RAF-indexed):
  • Uniprot A0ZW41 (Start-573)
    • conflict (349)
    • conflict (386)
• Heterogens: ATP, MG, ADP

PDB Chain Sequences:

• Chain 'A':
  No sequence available.
  
  
• Chain 'B':
  No sequence available.
  
  
• Chain 'C':
  No sequence available.
  
  
• Chain 'D':
  No sequence available.
  
  
• Chain 'E':
  No sequence available.
  
  
• Chain 'F':
  No sequence available.
  
  
• Chain 'G':
  No sequence available.
  
  
• Chain 'H':
  No sequence available.
  
  
• Chain 'I':
  No sequence available.
  
  
• Chain 'J':
  No sequence available.
  
  
• Chain 'P':
  No sequence available.
  
  
• Chain 'Q':
  No sequence available.
  
  
• Chain 'R':
  No sequence available.
  
  
• Chain 'S':
  Sequence, based on SEQRES records: (download)
  

  >6rerS (S:)
  malrkavlslglsqgvaaeavlgsgmfnavqhesvryasnqavkqriraiknigkitkam
  kmvaaskmknaqiaveqsrglvdpfvrlfgdfpavnsnksvvvavtsdkglcgglnsnit
  kytratlattesegkdvvvvsigdkgrsqltriesqryqlaiadtykvrvtfgqaslive
  elikhnpqsyqilfnkfrsaisfkptvatilspdllekqledvtgnsldaydieashers
  dvlrdltefhlgvtlynamlenncsehasrmsamenstksagemlgkltldynrkrqati
  ttelieiiagasalmde
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >6rerS (S:)
  snqavkqriraiknigkitkamkmvaaskmknaqiaveqsrglvdpfvrlfgdfpavnsn
  ksvvvavtsdkglcgglnsnitkytratlattesegkdvvvvsigdkgrsqltriesqry
  qlaiadtykvrvtfgqasliveelikhnpqsyqilfnkfrsaisfkptvatilspdllek
  qledvtgnsldaydieashersdvlrdltefhlgvtlynamlenncsehasrmsamenst
  ksagemlgkltldynrkrqatittelieiiagasalm
  

  
  
• Chain 'T':
  Sequence, based on SEQRES records: (download)
  

  >6rerT (T:)
  mrspaafvarsglfkaslgqsnwaqkaeqmmasvtrtfaadakaldelrkpkfsskyliq
  hvsqklipavkeweksyqppvihlgrvlsvgdgiarvyglksvqagelvcfdsgvkgmal
  nlqadhvgvvvfgndsvihqgdlvyrtgqivnvpigpgtlgrvtdglgqpidgkgpltnv
  rsslvevkapgiiarqsvreplftgvkavdalvpigrgqreliigdrqtgktavaidaii
  hqkncneqvpkaqrvycvyvavgqkrstvaqlvklftqtgamrytimvsatasdaaplqf
  lapysgcamaeyfrdtgkhgliiyddlskqsvayrqmslllrrppgreafpgdvfylhsr
  lleraaklskelgggsltafpvietqagdvsayiatnvisitdgqifletelfykgirpa
  lnvglsvsrvgsaaqfpgmkqvagtlklelaqyrevaafaqfgsdldaatqyvlergarl
  temlkqkqfapipierqtvavyaatkgfldkvrvqdivaaeeavisqvnpavfkilkang
  kitpaldahlkaelrkvklpga
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >6rerT (T:)
  grvlsvgdgiarvyglksvqagelvcfdsgvkgmalnlqadhvgvvvfgndsvihqgdlv
  yrtgqivnvpigpgtlgrvtdglgqpidgkgpltnvrsslvevkapgiiarqsvreplft
  gvkavdalvpigrgqreliigdrqtgktavaidaiihqkncneqvpkaqrvycvyvavgq
  krstvaqlvklftqtgamrytimvsatasdaaplqflapysgcamaeyfrdtgkhgliiy
  ddlskqsvayrqmslllrrppgreafpgdvfylhsrlleraaklskelgggsltafpvie
  tqagdvsayiatnvisitdgqifletelfykgirpalnvglsvsrvgsaaqfpgmkqvag
  tlklelaqyrevaafaqfgsdldaatqyvlergarltemlkqkqfapipierqtvavyaa
  tkgfldkvrvqdivaaeeavisqvnpavfkilkangkitpaldahlkaelrkvklpga
  

  
  
• Chain 'U':
  No sequence available.
  
  
• Chain 'V':
  No sequence available.
  
  
• Chain 'X':
  No sequence available.
  
  
• Chain 'Y':
  No sequence available.
  
  
• Chain 'Z':
  No sequence available.