PDB entry 6qh5

View 6qh5 on RCSB PDB site
Description: AP2 clathrin adaptor mu2T156-phosphorylated core in closed conformation
Class: protein transport
Keywords: endocytosis, phosphorylation, cell membrane, protein transport
Deposited on 2019-01-15, released 2019-09-04
The last revision prior to the SCOPe 2.07 freeze date was dated 2019-09-04, with a file datestamp of 2019-08-30.
Experiment type: XRAY
Resolution: 2.56 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: AP-2 complex subunit alpha
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Ap2a2
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6qh5a_
  • Chain 'B':
    Compound: ap-2 complex subunit beta
    Species: Homo sapiens [TaxId:9606]
    Gene: AP2B1, ADTB2, CLAPB1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6qh5b_
  • Chain 'M':
    Compound: ap-2 complex subunit mu
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Ap2m1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P84092 (Start-445)
      • insertion (221)
      • insertion (221)
      • insertion (221)
      • insertion (221)
      • insertion (221)
      • insertion (221)
      • insertion (221)
      • insertion (221)
  • Chain 'N':
    Compound: ap-2 complex subunit mu
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Ap2m1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6qh5n_
  • Chain 'S':
    Compound: ap-2 complex subunit sigma
    Species: Mus musculus [TaxId:10090]
    Gene: Ap2s1, Ap17, Claps2
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6qh5s_
  • Heterogens: IHP

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >6qh5A (A:)
    mpavskgegmrglavfisdirnckskeaeikrinkelanirskfkgdkaldgyskkkyvc
    kllfifllghdidfghmeavnllssnrytekqigylfisvlvnsnselirlinnaikndl
    asrnptfmglalhcianvgsremaeafageipkilvagdtmdsvkqsaalcllrlyrtsp
    dlvpmgdwtsrvvhllndqhlgvvtaatslittlaqknpeefktsvslavsrlsrivtsa
    stdlqdytyyfvpapwlsvkllrllqcypppedpavrgrltecletilnkaqeppkskkv
    qhsnaknavlfeaisliihhdsepnllvracnqlgqflqhretnlrylalesmctlasse
    fsheavkthietvinalkterdvsvrqravdllyamcdrsnaqqivaemlsyletadysi
    reeivlkvailaekyavdytwyvdtilnliriagdyvseevwyrviqivinrddvqgyaa
    ktvfealqapachenlvkvggyilgefgnliagdprsspliqfnllhskfhlcsvptral
    llstyikfvnlfpevkatiqdvlrsdsqlknadvelqqraveylrlstvastdilatvle
    emppfperessilaklkkkkg
    

    Sequence, based on observed residues (ATOM records): (download)
    >6qh5A (A:)
    gmrglavfisdirnckskeaeikrinkelanirskfkgdkaldgyskkkyvckllfifll
    ghdidfghmeavnllssnrytekqigylfisvlvnsnselirlinnaikndlasrnptfm
    glalhcianvgsremaeafageipkilvagdtmdsvkqsaalcllrlyrtspdlvpmgdw
    tsrvvhllndqhlgvvtaatslittlaqknpeefktsvslavsrlsrivtsastdlqdyt
    yyfvpapwlsvkllrllqcypppedpavrgrltecletilnkaqeppkskkvqhsnakna
    vlfeaisliihhdsepnllvracnqlgqflqhretnlrylalesmctlassefsheavkt
    hietvinalkterdvsvrqravdllyamcdrsnaqqivaemlsyletadysireeivlkv
    ailaekyavdytwyvdtilnliriagdyvseevwyrviqivinrddvqgyaaktvfealq
    apachenlvkvggyilgefgnliagdprsspliqfnllhskfhlcsvptralllstyikf
    vnlfpevkatiqdvlrsdsqlknadvelqqraveylrlstvastdilatvleemppfper
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >6qh5B (B:)
    mtdskyfttnkkgeifelkaelnnekkekrkeavkkviaamtvgkdvsslfpdvvncmqt
    dnlelkklvylylmnyaksqpdmaimavnsfvkdcedpnpliralavrtmgcirvdkite
    ylceplrkclkdedpyvrktaavcvaklhdinaqmvedqgfldslrdliadsnpmvvana
    vaalseiseshpnsnlldlnpqninklltalnectewgqifildclsnynpkddreaqsi
    cervtprlshansavvlsavkvlmkflellpkdsdyynmllkklapplvtllsgepevqy
    valrninlivqkrpeilkqeikvffvkyndpiyvklekldimirlasqaniaqvlaelke
    yatevdvdfvrkavraigrcaikveqsaercvstlldliqtkvnyvvqeaivvirdifrk
    ypnkyesiiatlcenldsldepdaraamiwivgeyaeridnadellesflegfhdestqv
    qltlltaivklflkkpsetqelvqqvlslatqdsdnpdlrdrgyiywrllstdpvtakev
    vlsekpliseetdlieptlldelichigslasvyhkppnafvegshgihrkh
    

    Sequence, based on observed residues (ATOM records): (download)
    >6qh5B (B:)
    skyfttnkkgeifelkaelnnekkekrkeavkkviaamtvgkdvsslfpdvvncmqtdnl
    elkklvylylmnyaksqpdmaimavnsfvkdcedpnpliralavrtmgcirvdkiteylc
    eplrkclkdedpyvrktaavcvaklhdinaqmvedqgfldslrdliadsnpmvvanavaa
    lseiseshpnsnlldlnpqninklltalnectewgqifildclsnynpkddreaqsicer
    vtprlshansavvlsavkvlmkflellpkdsdyynmllkklapplvtllsgepevqyval
    rninlivqkrpeilkqeikvffvkyndpiyvklekldimirlasqaniaqvlaelkeyat
    evdvdfvrkavraigrcaikveqsaercvstlldliqtkvnyvvqeaivvirdifrkypn
    kyesiiatlcenldsldepdaraamiwivgeyaeridnadellesflegfhdestqvqlt
    lltaivklflkkpsetqelvqqvlslatqdsdnpdlrdrgyiywrllstdpvtakevvls
    ekpliseetdlieptlldelichigslasvyhkppnafv
    

  • Chain 'M':
    No sequence available.

  • Chain 'N':
    Sequence, based on SEQRES records: (download)
    >6qh5N (N:)
    migglfiynhkgevlisrvyrddigrnavdafrvnviharqqvrspvtniartsffhvkr
    sniwlaavtkqnvnaamvfeflykmcdvmaayfgkiseeniknnfvliyelldeildfgy
    pqnsetgalktfitqqgiksqhqtkeeqsqitsqvtgqigwrregikyrrnelfldvles
    vnllmspqgqvlsahvsgrvvmksylsgmpeckfgmndkiviekqgkgtadetsksmeqk
    liseedlgkqsiaiddctfhqcvrlskfdsersisfippdgefelmryrttkdiilpfrv
    iplvrevgrtklevkvviksnfkpsllaqkievriptplntsgvqvicmkgkakykasen
    aivwkikrmagmkesqisaeiellptndkkkwarppismnfevpfapsglkvrylkvfep
    klnysdhdvikwvryigrsgiyetrc
    

    Sequence, based on observed residues (ATOM records): (download)
    >6qh5N (N:)
    migglfiynhkgevlisrvyrddigrnavdafrvnviharqqvrspvtniartsffhvkr
    sniwlaavtkqnvnaamvfeflykmcdvmaayfgkiseeniknnfvliyelldeildfgy
    pqnsetgalktfitqqgiksq
    

  • Chain 'S':
    Sequence; same for both SEQRES and ATOM records: (download)
    >6qh5S (S:)
    mirfiliqnragktrlakwymqfdddekqklieevhavvtvrdakhtnfvefrnfkiiyr
    ryaglyfcicvdvndnnlayleaihnfvevlneyfhnvceldlvfnfykvytvvdemfla
    geiretsqtkvlkqllmlqsle