PDB entry 6qgy

View 6qgy on RCSB PDB site
Description: Crystal structure of E.coli BamA beta-barrel in complex with nanobody B12
Class: membrane protein
Keywords: Beta-Barrel, outer membrane, protein insertion, protein folding, protein maturation, MEMBRANE PROTEIN
Deposited on 2019-01-14, released 2019-06-26
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-08-21, with a file datestamp of 2019-08-16.
Experiment type: XRAY
Resolution: 2.51 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Outer membrane protein assembly factor BamA
    Species: Escherichia coli O157:H7 [TaxId:83334]
    Gene: bamA, yaeT, Z0188, ECs0179
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A942 (Start-410)
      • engineered mutation (300)
  • Chain 'B':
    Compound: NanoB12
    Species: Lama glama [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 6QGY (Start-123)
    Domains in SCOPe 2.08: d6qgyb_
  • Chain 'C':
    Compound: Outer membrane protein assembly factor BamA
    Species: Escherichia coli O157:H7 [TaxId:83334]
    Gene: bamA, yaeT, Z0188, ECs0179
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A942 (Start-410)
      • engineered mutation (300)
  • Chain 'D':
    Compound: NanoB12
    Species: Lama glama [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 6QGY (Start-123)
    Domains in SCOPe 2.08: d6qgyd_
  • Heterogens: C8E, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6qgyB (B:)
sqgqlvesgggmvqaggslrlscaasgrtfngwtaawfrqapgkdrefvaaisrsgdyty
ytnsvkgrftisrdsaknnlylqmdslkpedtavyycaaktgtwatmdrrydywgqgtrv
tvsa

    Sequence, based on observed residues (ATOM records): (download) 
    >6qgyB (B:)
qlvesgggmvqaggslrlscaasgrtfngwtaawfrqapgkdrefvaaisrsgdytyytn
svkgrftisrdsaknnlylqmdslkpedtavyycaaktgtwatmdrrydywgqgtrvtvs
a

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6qgyD (D:)
sqgqlvesgggmvqaggslrlscaasgrtfngwtaawfrqapgkdrefvaaisrsgdyty
ytnsvkgrftisrdsaknnlylqmdslkpedtavyycaaktgtwatmdrrydywgqgtrv
tvsa

    Sequence, based on observed residues (ATOM records): (download) 
    >6qgyD (D:)
gqlvesgggmvqaggslrlscaasgrtfngwtaawfrqapgkdrefvaaisrsgdytyyt
nsvkgrftisrdsaknnlylqmdslkpedtavyycaaktgtwatmdrrydywgqgtrvtv
sa