PDB entry 6q0r
View 6q0r on RCSB PDB site
Description: Structure of DDB1-DDA1-DCAF15 complex bound to E7820 and RBM39
Class: ligase
Keywords: Ubiquitin, homeostasis, targeted protein degradation, LIGASE
Deposited on
2019-08-02, released
2019-11-13
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-01-01, with a file datestamp of
2019-12-27.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: N/A
AEROSPACI score: 0.14
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: DNA damage-binding protein 1
Species: Homo sapiens [TaxId:9606]
Gene: DDB1, XAP1
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: DDB1- and CUL4-associated factor 15
Species: Homo sapiens [TaxId:9606]
Gene: DCAF15, C19orf72
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: DDB1- and CUL4-associated factor 15
Species: Homo sapiens [TaxId:9606]
Gene: DCAF15, C19orf72
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: RNA-binding protein 39
Species: Homo sapiens [TaxId:9606]
Gene: RBM39, HCC1, RNPC2
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6q0rd1, d6q0rd2 - Chain 'E':
Compound: DET1- and DDB1-associated protein 1
Species: Homo sapiens [TaxId:9606]
Gene: DDA1, C19orf58, PCIA1
Database cross-references and differences (RAF-indexed):
- Heterogens: O6M, OXM, ZN, HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
No sequence available.
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence, based on SEQRES records: (download)
>6q0rD (D:)
mgsshhhhhhsavdenlyfqgggrmrlyvgslhfnitedmlrgifepfgriesiqlmmds
etgrskgygfitfsdsecakkaleqlngfelagrpmkvghvtertda
Sequence, based on observed residues (ATOM records): (download)
>6q0rD (D:)
grmrlyvgslhfnitedmlrgifepfgriesiqlmmdsetgrskgygfitfsdsecakka
leqlngfelagrpmkvghvter
- Chain 'E':
No sequence available.