PDB entry 6oy4

View 6oy4 on RCSB PDB site
Description: Crystal structure of complex between recombinant Der p 2.0103 and Fab fragment of 7A1
Class: allergen/immune system
Keywords: Allergen, dust mite, antibody binding, allergen-immune system complex
Deposited on 2019-05-14, released 2019-08-28
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-03-11, with a file datestamp of 2020-03-06.
Experiment type: XRAY
Resolution: 2.45 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Der p 2 variant 3
    Species: Dermatophagoides pteronyssinus [TaxId:6956]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6oy4a_
  • Chain 'C':
    Compound: Fab fragment of IgG, HEAVY CHAIN
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6OY4 (0-215)
    Domains in SCOPe 2.08: d6oy4c1, d6oy4c2
  • Chain 'D':
    Compound: Fab fragment of IgG, LIGHT CHAIN
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6OY4 (0-220)
    Domains in SCOPe 2.08: d6oy4d_
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6oy4A (A:)
dqvdvkdcanheikkvlvpgchgsepciihrgkpfqlealfeanqnsktakieikasidg
levdvpgidpnachymkcplvkgqqydikytwnvpkiapksenvvvtvkvmgdngvlaca
iathakird

    Sequence, based on observed residues (ATOM records): (download) 
    >6oy4A (A:)
dqvdvkdcanheikkvlvpgchgsepciihrgkpfqlealfeanqnsakieikasidgle
vdvpgidpnachymlvkgqqydikytwnvpkiapksenvvvtvkvdngvlacaiathaki
rd

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6oy4C (C:)
divltqspaslavslgqratisckasqsvdyggnsyvnwyqqkpgqppklliyaasnlks
giparfsgsgsgtdftlnihpveeedaatyycqqsnedpwtfgggtkleikradaaptvs
ifppsseqltsggasvvcflnnfypkdinvawkidgserqngvlnswtdqdskdstysms
stltltkdeyerhnsytceathktstspivksfnrn

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6oy4D (D:)
qiqlvqsgpelkkpgetikisckasgytftnygmnwvkqtpgkglkwmgwinpytgeeps
yaddfkgrfafsletsantaylqinnlnnedmatyfcarggftdyygmdywgqgtsvtvs
sakttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgsassgvhtfpavlqs
dlytlsssvtvpsstwpsetvtcnvahpasstkvdkkivpr

    Sequence, based on observed residues (ATOM records): (download) 
    >6oy4D (D:)
qiqlvqsgpelkkpgetikisckasgytftnygmnwvkqtpgkglkwmgwinpytgeeps
yaddfkgrfafsletsantaylqinnlnnedmatyfcarggftdyygmdywgqgtsvtvs
sakttppsvyplapgsnsmvtlgclvkgyfpepvtvtwnsgsassgvhtfpavlqsdlyt
lsssvtvpsstwpsetvtcnvahpasstkvdkkivpr