PDB entry 6ona

View 6ona on RCSB PDB site
Description: Crystal structure of Influenza hemagglutinin from strain A/Hickox/JY2/1940
Class: viral protein
Keywords: Inflenza hemagglutinin, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID, VIRAL PROTEIN
Deposited on 2019-04-20, released 2019-05-01
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: N/A
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin
    Species: Influenza A virus (strain A/Hickox/1940 H1N1) [TaxId:383543]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6onaa1, d6onaa2, d6onaa3
  • Chain 'B':
    Compound: Hemagglutinin
    Species: Influenza A virus (strain A/Hickox/1940 H1N1) [TaxId:383543]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6onab1, d6onab2, d6onab3
  • Chain 'C':
    Compound: Hemagglutinin
    Species: Influenza A virus (strain A/Hickox/1940 H1N1) [TaxId:383543]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6onac1, d6onac2, d6onac3
  • Heterogens: NAG, PEG, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6onaA (A:)
gsdticigyhannstdtvdtvleknvtvthsvnlledshngklcrlkgiaplqlgkcnia
gwilgnpecesllskrswsyiaetpnsengtcypgdfadyeelreqlssvssferfeifp
kerswpnhninigvtaacshagkssfyknllwltekdgsypnlnksyvnkkekevlvlwg
vhhpsnienqktlyrkenayvsvvssnynrrftpeiaerpkvrgqagrmnyywtllepgd
tiifeangnliapwyafalsrglgsgiitsnasmdecdtkcqtpqgainsslpfqnihpf
tigecpkyvrstklrmvtglrnipsiqsrglfgaiagfieggwagmidgwygyhhqneqg
sgyaadqkstqnaingitnkvnsviekmntqftavgkefnklekrmenlnkkvddgfldi
wtynaellvllenertldfhdsnvknlyekvknqlrnnakeigngcfefyhkcnnecmes
vkngtydypkyseeflvprgspgsgyipeaprdgqayvrkdgewvllstflghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6onaA (A:)
sdticigyhannstdtvdtvleknvtvthsvnlledshngklcrlkgiaplqlgkcniag
wilgnpeceslrswsyiaetpnsengtcypgdfadyeelreqlssvssferfeifpkers
wpnhninigvtaacshagkssfyknllwltekdgsypnlnksyvnkkekevlvlwgvhhp
snienqktlyrkenayvsvvssnynrrftpeiaerpkvrgqagrmnyywtllepgdtiif
eangnliapwyafalsrglgsgiitsnasmdecdtkcqtpqgainsslpfqnihpftige
cpkyvrstklrmvtglrnipglfgaiagfieggwagmidgwygyhhqneqgsgyaadqks
tqnaingitnkvnsviekmntqftavgkefnklekrmenlnkkvddgfldiwtynaellv
llenertldfhdsnvknlyekvknqlrnnakeigngcfefyhkcnnecmesvkngtydy

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6onaB (B:)
gsdticigyhannstdtvdtvleknvtvthsvnlledshngklcrlkgiaplqlgkcnia
gwilgnpecesllskrswsyiaetpnsengtcypgdfadyeelreqlssvssferfeifp
kerswpnhninigvtaacshagkssfyknllwltekdgsypnlnksyvnkkekevlvlwg
vhhpsnienqktlyrkenayvsvvssnynrrftpeiaerpkvrgqagrmnyywtllepgd
tiifeangnliapwyafalsrglgsgiitsnasmdecdtkcqtpqgainsslpfqnihpf
tigecpkyvrstklrmvtglrnipsiqsrglfgaiagfieggwagmidgwygyhhqneqg
sgyaadqkstqnaingitnkvnsviekmntqftavgkefnklekrmenlnkkvddgfldi
wtynaellvllenertldfhdsnvknlyekvknqlrnnakeigngcfefyhkcnnecmes
vkngtydypkyseeflvprgspgsgyipeaprdgqayvrkdgewvllstflghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6onaB (B:)
sdticigyhannstdtvdtvleknvtvthsvnlledshngklcrlkgiaplqlgkcniag
wilgnpeckrswsyiaetpnsengtcypgdfadyeelreqlssvssferfeifpkerswp
nhninigvtaacshagkssfyknllwltekdgsypnlnksyvnkkekevlvlwgvhhpsn
ienqktlyrkenayvsvvssnynrrftpeiaerpkvrgqagrmnyywtllepgdtiifea
ngnliapwyafalsrglgsgiitsnasmdecdtkcqtpqgainsslpfqnihpftigecp
kyvrstklrmvtglrnipglfgaiagfieggwagmidgwygyhhqneqgsgyaadqkstq
naingitnkvnsviekmntqftavgkefnklekrmenlnkkvddgfldiwtynaellvll
enertldfhdsnvknlyekvknqlrnnakeigngcfefyhkcnnecmesvkngtydypky

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6onaC (C:)
gsdticigyhannstdtvdtvleknvtvthsvnlledshngklcrlkgiaplqlgkcnia
gwilgnpecesllskrswsyiaetpnsengtcypgdfadyeelreqlssvssferfeifp
kerswpnhninigvtaacshagkssfyknllwltekdgsypnlnksyvnkkekevlvlwg
vhhpsnienqktlyrkenayvsvvssnynrrftpeiaerpkvrgqagrmnyywtllepgd
tiifeangnliapwyafalsrglgsgiitsnasmdecdtkcqtpqgainsslpfqnihpf
tigecpkyvrstklrmvtglrnipsiqsrglfgaiagfieggwagmidgwygyhhqneqg
sgyaadqkstqnaingitnkvnsviekmntqftavgkefnklekrmenlnkkvddgfldi
wtynaellvllenertldfhdsnvknlyekvknqlrnnakeigngcfefyhkcnnecmes
vkngtydypkyseeflvprgspgsgyipeaprdgqayvrkdgewvllstflghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6onaC (C:)
sdticigyhannstdtvdtvleknvtvthsvnlledshngklcrlkgiaplqlgkcniag
wilgnpecesllskrswsyiaetpnsengtcypgdfadyeelreqlssvssferfeifpk
erswpnhninigvtaacshagkssfyknllwltekdgsypnlnksyvnkkekevlvlwgv
hhpsnienqktlyrkenayvsvvssnynrrftpeiaerpkvrgqagrmnyywtllepgdt
iifeangnliapwyafalsrglgsgiitsnasmdecdtkcqtpqgainsslpfqnihpft
igecpkyvrstklrmvtglrnipglfgaiagfieggwagmidgwygyhhqneqgsgyaad
qkstqnaingitnkvnsviekmntqftavgkefnklekrmenlnkkvddgfldiwtynae
llvllenertldfhdsnvknlyekvknqlrnnakeigngcfefyhkcnnecmesvkngty
dypky