PDB entry 6oc8
View 6oc8 on RCSB PDB site
Description: Crystal structure of a VHH against the capsid protein from BLV
Class: immune system
Keywords: VHH heavy chain antibody, BLV capsid protein, IMMUNE SYSTEM
Deposited on
2019-03-22, released
2020-03-25
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-03-25, with a file datestamp of
2020-03-20.
Experiment type: XRAY
Resolution: 2.11 Å
R-factor: N/A
AEROSPACI score: 0.28
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: VHH8c
Species: LAMA GLAMA [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6oc8a1, d6oc8a2 - Chain 'B':
Compound: VHH8c
Species: LAMA GLAMA [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6oc8b1, d6oc8b2 - Chain 'C':
Compound: VHH8c
Species: LAMA GLAMA [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6oc8c1, d6oc8c2 - Chain 'D':
Compound: VHH8c
Species: LAMA GLAMA [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6oc8d1, d6oc8d2 - Heterogens: SO4, GOL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>6oc8A (A:)
gshmaevqlvesggglvqaggslrlscaasasifralnvgyyrqtpgrqreliagisggg
sthyadpvkgrftisrdnaknrvdlqmnnlkpedtavyycnagptlttgdagpywgqgtq
vtvss
Sequence, based on observed residues (ATOM records): (download)
>6oc8A (A:)
maevqlvesggglvqaggslrlscaasasifralnvgyyrqtpgrqreliagisgggsth
yadpvkgrftisrdnaknrvdlqmnnlkpedtavyycnagptlttgdagpywgqgtqvtv
s
- Chain 'B':
Sequence, based on SEQRES records: (download)
>6oc8B (B:)
gshmaevqlvesggglvqaggslrlscaasasifralnvgyyrqtpgrqreliagisggg
sthyadpvkgrftisrdnaknrvdlqmnnlkpedtavyycnagptlttgdagpywgqgtq
vtvss
Sequence, based on observed residues (ATOM records): (download)
>6oc8B (B:)
hmaevqlvesggglvqaggslrlscaasasifralnvgyyrqtpgrqreliagisgggst
hyadpvkgrftisrdnaknrvdlqmnnlkpedtavyycnagptlttgdagpywgqgtqvt
vss
- Chain 'C':
Sequence, based on SEQRES records: (download)
>6oc8C (C:)
gshmaevqlvesggglvqaggslrlscaasasifralnvgyyrqtpgrqreliagisggg
sthyadpvkgrftisrdnaknrvdlqmnnlkpedtavyycnagptlttgdagpywgqgtq
vtvss
Sequence, based on observed residues (ATOM records): (download)
>6oc8C (C:)
maevqlvesggglvqaggslrlscaasasifralnvgyyrqtpgrqreliagisgggsth
yadpvkgrftisrdnaknrvdlqmnnlkpedtavyycnagptlttgdagpywgqgtqvtv
ss
- Chain 'D':
Sequence, based on SEQRES records: (download)
>6oc8D (D:)
gshmaevqlvesggglvqaggslrlscaasasifralnvgyyrqtpgrqreliagisggg
sthyadpvkgrftisrdnaknrvdlqmnnlkpedtavyycnagptlttgdagpywgqgtq
vtvss
Sequence, based on observed residues (ATOM records): (download)
>6oc8D (D:)
maevqlvesggglvqaggslrlscaasasifralnvgyyrqtpgrqreliagisgggsth
yadpvkgrftisrdnaknrvdlqmnnlkpedtavyycnagptlttgdagpywgqgtqvtv