PDB entry 6oc8

View 6oc8 on RCSB PDB site
Description: Crystal structure of a VHH against the capsid protein from BLV
Class: immune system
Keywords: VHH heavy chain antibody, BLV capsid protein, IMMUNE SYSTEM
Deposited on 2019-03-22, released 2020-03-25
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-03-25, with a file datestamp of 2020-03-20.
Experiment type: XRAY
Resolution: 2.11 Å
R-factor: N/A
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: VHH8c
    Species: LAMA GLAMA [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 6OC8
    Domains in SCOPe 2.08: d6oc8a1, d6oc8a2
  • Chain 'B':
    Compound: VHH8c
    Species: LAMA GLAMA [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 6OC8 (Start-124)
    Domains in SCOPe 2.08: d6oc8b1, d6oc8b2
  • Chain 'C':
    Compound: VHH8c
    Species: LAMA GLAMA [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 6OC8 (Start-124)
    Domains in SCOPe 2.08: d6oc8c1, d6oc8c2
  • Chain 'D':
    Compound: VHH8c
    Species: LAMA GLAMA [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 6OC8
    Domains in SCOPe 2.08: d6oc8d1, d6oc8d2
  • Heterogens: SO4, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >6oc8A (A:)
    gshmaevqlvesggglvqaggslrlscaasasifralnvgyyrqtpgrqreliagisggg
    sthyadpvkgrftisrdnaknrvdlqmnnlkpedtavyycnagptlttgdagpywgqgtq
    vtvss
    

    Sequence, based on observed residues (ATOM records): (download)
    >6oc8A (A:)
    maevqlvesggglvqaggslrlscaasasifralnvgyyrqtpgrqreliagisgggsth
    yadpvkgrftisrdnaknrvdlqmnnlkpedtavyycnagptlttgdagpywgqgtqvtv
    s
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >6oc8B (B:)
    gshmaevqlvesggglvqaggslrlscaasasifralnvgyyrqtpgrqreliagisggg
    sthyadpvkgrftisrdnaknrvdlqmnnlkpedtavyycnagptlttgdagpywgqgtq
    vtvss
    

    Sequence, based on observed residues (ATOM records): (download)
    >6oc8B (B:)
    hmaevqlvesggglvqaggslrlscaasasifralnvgyyrqtpgrqreliagisgggst
    hyadpvkgrftisrdnaknrvdlqmnnlkpedtavyycnagptlttgdagpywgqgtqvt
    vss
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >6oc8C (C:)
    gshmaevqlvesggglvqaggslrlscaasasifralnvgyyrqtpgrqreliagisggg
    sthyadpvkgrftisrdnaknrvdlqmnnlkpedtavyycnagptlttgdagpywgqgtq
    vtvss
    

    Sequence, based on observed residues (ATOM records): (download)
    >6oc8C (C:)
    maevqlvesggglvqaggslrlscaasasifralnvgyyrqtpgrqreliagisgggsth
    yadpvkgrftisrdnaknrvdlqmnnlkpedtavyycnagptlttgdagpywgqgtqvtv
    ss
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >6oc8D (D:)
    gshmaevqlvesggglvqaggslrlscaasasifralnvgyyrqtpgrqreliagisggg
    sthyadpvkgrftisrdnaknrvdlqmnnlkpedtavyycnagptlttgdagpywgqgtq
    vtvss
    

    Sequence, based on observed residues (ATOM records): (download)
    >6oc8D (D:)
    maevqlvesggglvqaggslrlscaasasifralnvgyyrqtpgrqreliagisgggsth
    yadpvkgrftisrdnaknrvdlqmnnlkpedtavyycnagptlttgdagpywgqgtqvtv