PDB entry 6obm

View 6obm on RCSB PDB site
Description: Ricin A chain bound to VHH antibody V6A7
Class: toxin
Keywords: toxin
Deposited on 2019-03-21, released 2020-04-01
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-10-14, with a file datestamp of 2020-10-09.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ricin a chain
    Species: Ricinus communis [TaxId:3988]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P02879 (0-258)
      • conflict (106)
    Domains in SCOPe 2.08: d6obma_
  • Chain 'B':
    Compound: VHH antibody V6A7
    Species: VICUGNA PACOS [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 6OBM (0-119)
    Domains in SCOPe 2.08: d6obmb_
  • Heterogens: CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6obmA (A:)
qypiinfttagatvqsytnfiravrgrlttgadvrheipvlpnrvglpinqrfilvelsn
haelsvtlaldvtnayvvgyragnsayffhpdnqedaeaithlftdnqnrytfafggnyd
rleqlagnlrenielgngpleeaisalyyystggtqlptlarsfiiciqmiseaarfqyi
egemrtrirynrrsapdpsvitlenswgrlstaiqesnqgafaspiqlqrrngskfsvyd
vsilipiialmvyrcappp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6obmB (B:)
qvqlvetgggglvqaggslrlscaasgsisslnamgwyrqapgkerelvadisasgrtny
adsvkgrftisrdnakntvslqmnslkpedtavyycnavggtyyydeydywgqgtqvtvs

    Sequence, based on observed residues (ATOM records): (download) 
    >6obmB (B:)
qvqlvetglvqaggslrlscaasgsisslnamgwyrqapgkerelvadisasgrtnyads
vkgrftisrdnakntvslqmnslkpedtavyycnavggtyyydeydywgqgtqvtvs