PDB entry 6oat

View 6oat on RCSB PDB site
Description: Structure of the Ganjam virus OTU bound to sheep ISG15
Class: hydrolase
Keywords: DUB, deISGylase, Innate Immunity, HYDROLASE
Deposited on 2019-03-18, released 2020-01-08
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-01-08, with a file datestamp of 2020-01-03.
Experiment type: XRAY
Resolution: 3.17 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: RNA-dependent RNA polymerase
    Species: Ganjam virus [TaxId:1810948]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Interferon stimulated gene 17
    Species: Ovis aries [TaxId:9940]
    Gene: ISG17
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9GKP4 (Start-155)
      • conflict (77)
    Domains in SCOPe 2.08: d6oatb1, d6oatb2
  • Chain 'C':
    Compound: RNA-dependent RNA polymerase
    Species: Ganjam virus [TaxId:1810948]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Interferon stimulated gene 17
    Species: Ovis aries [TaxId:9940]
    Gene: ISG17
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9GKP4 (Start-155)
      • conflict (77)
    Domains in SCOPe 2.08: d6oatd1, d6oatd2
  • Heterogens: AYE

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6oatB (B:)
mggdlkvkmlggeeilvplrdsmmvselkqfiaqkinvpafqqrlahldsrevlqegvpl
vhqglkagstillmvqnssatlnilvrndkgrsssyevqltqtvavlkqqvcqrervqad
qfwlsfegkpmddehplgeyglttgctvfmnlrlrg

    Sequence, based on observed residues (ATOM records): (download) 
    >6oatB (B:)
ggdlkvkmlggeeilvplrdsmmvselkqfiaqkinvpafqqrlahldsrevlqegvplv
hqglkagstillmvqnssatlnilvrndkgrsssyevqltqtvavlkqqvcqrervqadq
fwlsfegkpmddehplgeyglttgctvfmnlrlrg

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6oatD (D:)
mggdlkvkmlggeeilvplrdsmmvselkqfiaqkinvpafqqrlahldsrevlqegvpl
vhqglkagstillmvqnssatlnilvrndkgrsssyevqltqtvavlkqqvcqrervqad
qfwlsfegkpmddehplgeyglttgctvfmnlrlrg

    Sequence, based on observed residues (ATOM records): (download) 
    >6oatD (D:)
dlkvkmlggeeilvplrdsmmvselkqfiaqkinvpafqqrlahldsrevlqegvplvhq
glkagstillmvqnssatlnilvrndkgrsssyevqltqtvavlkqqvcqrervqadqfw
lsfegkpmddehplgeyglttgctvfmnlrlrg