PDB entry 6nyo
View 6nyo on RCSB PDB site
Description: Crystal structure of a human Cdc34-ubiquitin thioester mimetic
Class: ligase/transferase
Keywords: CONFORMATIONAL CHANGE, THIOESTER, ADENYLATION, THIOESTER TRANSFER, TRANSTHIOESTERIFICATION, ATP-BINDING, UBIQUITIN E2-BINDING, UBIQUITINATION, LIGASE, LIGASE-TRANSFERASE complex
Deposited on
2019-02-11, released
2019-08-07
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-01-01, with a file datestamp of
2019-12-27.
Experiment type: XRAY
Resolution: 1.5 Å
R-factor: N/A
AEROSPACI score: 0.5
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Ubiquitin-conjugating enzyme E2 R2
Species: Homo sapiens [TaxId:9606]
Gene: UBE2R2, CDC34B, UBC3B
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6nyoa_ - Chain 'E':
Compound: Ubiquitin
Species: Schizosaccharomyces pombe [TaxId:4896]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6nyoe1, d6nyoe2 - Heterogens: U94, EDO, PO4, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>6nyoA (A:)
gamaqqqmtssqkalmlelkslqeepvegfritlvdesdlynwevaifgppntlyeggyf
kahikfpidypyspptfrfltkmwhpniyengdvkisilhppvddpqsgelpserwnptq
nvrtillsvisllnepntfspanvdasvmfrkwrdskgkdkeyaeiirkqvsatkaeaek
dgvkvpttlaeyciktkvpsndns
Sequence, based on observed residues (ATOM records): (download)
>6nyoA (A:)
qmtssqkalmlelkslqeepvegfritlvdesdlynwevaifgppntlyeggyfkahikf
pidypyspptfrfltkmwhpniyengdvkisilhppvddpqsgelpserwnptqnvrtil
lsvisllnepntfspanvdasvmfrkwrdskgkdkeyaeiirkqvsatkaeaekdgvkvp
ttlaeyci
- Chain 'E':
Sequence, based on SEQRES records: (download)
>6nyoE (E:)
mgsshhhhhhssglvprgshmqifvktltgktitlevessdtidnvkskiqdkegippdq
qrlifagkqledgrtlsdyniqkestlhlvlrlrgg
Sequence, based on observed residues (ATOM records): (download)
>6nyoE (E:)
shmqifvktltgktitlevessdtidnvkskiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrlrgg