PDB entry 6nyd

View 6nyd on RCSB PDB site
Description: Crystal Structure of S. cerevisiae Ubc3 (Cdc34)
Class: ligase/transferase
Keywords: CONFORMATIONAL CHANGE, THIOESTER, ADENYLATION, THIOESTER TRANSFER, TRANSTHIOESTERIFICATION, ATP-BINDING, UBIQUITIN E2-BINDING, UBIQUITINATION, LIGASE, LIGASE-TRANSFERASE complex
Deposited on 2019-02-11, released 2019-08-07
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-01-01, with a file datestamp of 2019-12-27.
Experiment type: XRAY
Resolution: 1.65 Å
R-factor: N/A
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'C':
    Compound: Ubiquitin-conjugating enzyme E2-34 kDa
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: CDC34, DNA6, UBC3, YDR054C, D4211, YD9609.08C
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6nydc_
  • Heterogens: ZN, ACT, HOH

PDB Chain Sequences:

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6nydC (C:)
gamasrkstasslllrqyreltdpkkaipsfhieleddsniftwnigvmvlnedsiyhgg
ffkaqmrfpedfpfsppqfrftpaiyhpnvyrdgrlcisilhqsgdpmtdepdaetwspv
qtvesvlisivslledpninspanvdaavdyrknpeqykqrvkmeverskqdipkgfimp
tsesayisqskldepes

    Sequence, based on observed residues (ATOM records): (download) 
    >6nydC (C:)
srkstasslllrqyreltdpkkaipsfhieleddsniftwnigvmvlnedsiyhggffka
qmrfpedfpfsppqfrftpaiyhpnvyrdgrlcisilhqsetwspvqtvesvlisivsll
edpninspanvdaavdyrknpeqykqrvkmeverskqdipkgfimp