PDB entry 6nic

View 6nic on RCSB PDB site
Description: Crystal Structure of Medicago truncatula Agmatine Iminohydrolase (Deiminase) in Complex with 6-aminohexanamide
Class: hydrolase
Keywords: Polyamine metabolism, Putrescine biosynthesis, HYDROLASE
Deposited on 2018-12-27, released 2019-03-20
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-12-04, with a file datestamp of 2019-11-29.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Porphyromonas-type peptidyl-arginine deiminase
    Species: Medicago truncatula [TaxId:3880]
    Gene: 11445422, MTR_4g112810, MtrunA17_Chr4g0061951
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6nica_
  • Chain 'B':
    Compound: Porphyromonas-type peptidyl-arginine deiminase
    Species: Medicago truncatula [TaxId:3880]
    Gene: 11445422, MTR_4g112810, MtrunA17_Chr4g0061951
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6nicb_
  • Chain 'C':
    Compound: Porphyromonas-type peptidyl-arginine deiminase
    Species: Medicago truncatula [TaxId:3880]
    Gene: 11445422, MTR_4g112810, MtrunA17_Chr4g0061951
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6nicc_
  • Chain 'D':
    Compound: Porphyromonas-type peptidyl-arginine deiminase
    Species: Medicago truncatula [TaxId:3880]
    Gene: 11445422, MTR_4g112810, MtrunA17_Chr4g0061951
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6nicd_
  • Heterogens: PGE, KQY, PEG, NA, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6nicA (A:)
snahgfhmpaewephsqcwigwperadnwrdgavhaqlvftrvaaaisrfekvtvcassa
qwenarnqlpdhvrvveissndswfrdigptfvvrretsksddaehriagidwtfnswgg
ledgcycdwsldslvkkkildveriprfshsmvleggsihvdgegtcitteecllnknrn
phlsksqiedelkaylgvrkviwlprglygdddtnghvdnmccfvrpgavllswtddktd
pqyerseeayslfssvtdangrkfeviklhvpgplymtekeaagvfqddgakprlpgtrl
aasyvnfyiangaiiapqfgdkkwddeairvlsktfphhevvgiegsreivlsggnihci
tqqqpai

    Sequence, based on observed residues (ATOM records): (download) 
    >6nicA (A:)
gfhmpaewephsqcwigwperadnwrdgavhaqlvftrvaaaisrfekvtvcassaqwen
arnqlpdhvrvveissndswfrdigptfvvrreehriagidwtfnswggledgcycdwsl
dslvkkkildveriprfshsmvleggsihvdgegtcitteecllnknrnphlsksqiede
lkaylgvrkviwlprglygdddtnghvdnmccfvrpgavllswtddktdpqyerseeays
lfssvtdangrkfeviklhvpgplymtekeaagvfqddgakprlpgtrlaasyvnfyian
gaiiapqfgdkkwddeairvlsktfphhevvgiegsreivlsggnihcitqqqpai

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6nicB (B:)
snahgfhmpaewephsqcwigwperadnwrdgavhaqlvftrvaaaisrfekvtvcassa
qwenarnqlpdhvrvveissndswfrdigptfvvrretsksddaehriagidwtfnswgg
ledgcycdwsldslvkkkildveriprfshsmvleggsihvdgegtcitteecllnknrn
phlsksqiedelkaylgvrkviwlprglygdddtnghvdnmccfvrpgavllswtddktd
pqyerseeayslfssvtdangrkfeviklhvpgplymtekeaagvfqddgakprlpgtrl
aasyvnfyiangaiiapqfgdkkwddeairvlsktfphhevvgiegsreivlsggnihci
tqqqpai

    Sequence, based on observed residues (ATOM records): (download) 
    >6nicB (B:)
gfhmpaewephsqcwigwperadnwrdgavhaqlvftrvaaaisrfekvtvcassaqwen
arnqlpdhvrvveissndswfrdigptfvvrreehriagidwtfnswggledgcycdwsl
dslvkkkildveriprfshsmvleggsihvdgegtcitteecllnknrnphlsksqiede
lkaylgvrkviwlprglygdddtnghvdnmccfvrpgavllswtddktdpqyerseeays
lfssvtdangrkfeviklhvpgplymtekeaagvfqddgakprlpgtrlaasyvnfyian
gaiiapqfgdkkwddeairvlsktfphhevvgiegsreivlsggnihcitqqqpai

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6nicC (C:)
snahgfhmpaewephsqcwigwperadnwrdgavhaqlvftrvaaaisrfekvtvcassa
qwenarnqlpdhvrvveissndswfrdigptfvvrretsksddaehriagidwtfnswgg
ledgcycdwsldslvkkkildveriprfshsmvleggsihvdgegtcitteecllnknrn
phlsksqiedelkaylgvrkviwlprglygdddtnghvdnmccfvrpgavllswtddktd
pqyerseeayslfssvtdangrkfeviklhvpgplymtekeaagvfqddgakprlpgtrl
aasyvnfyiangaiiapqfgdkkwddeairvlsktfphhevvgiegsreivlsggnihci
tqqqpai

    Sequence, based on observed residues (ATOM records): (download) 
    >6nicC (C:)
gfhmpaewephsqcwigwperadnwrdgavhaqlvftrvaaaisrfekvtvcassaqwen
arnqlpdhvrvveissndswfrdigptfvvrredaehriagidwtfnswggledgcycdw
sldslvkkkildveriprfshsmvleggsihvdgegtcitteecllnknrnphlsksqie
delkaylgvrkviwlprglygdddtnghvdnmccfvrpgavllswtddktdpqyerseea
yslfssvtdangrkfeviklhvpgplymtekeaagvfqddgakprlpgtrlaasyvnfyi
angaiiapqfgdkkwddeairvlsktfphhevvgiegsreivlsggnihcitqqqpai

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6nicD (D:)
snahgfhmpaewephsqcwigwperadnwrdgavhaqlvftrvaaaisrfekvtvcassa
qwenarnqlpdhvrvveissndswfrdigptfvvrretsksddaehriagidwtfnswgg
ledgcycdwsldslvkkkildveriprfshsmvleggsihvdgegtcitteecllnknrn
phlsksqiedelkaylgvrkviwlprglygdddtnghvdnmccfvrpgavllswtddktd
pqyerseeayslfssvtdangrkfeviklhvpgplymtekeaagvfqddgakprlpgtrl
aasyvnfyiangaiiapqfgdkkwddeairvlsktfphhevvgiegsreivlsggnihci
tqqqpai

    Sequence, based on observed residues (ATOM records): (download) 
    >6nicD (D:)
hgfhmpaewephsqcwigwperadnwrdgavhaqlvftrvaaaisrfekvtvcassaqwe
narnqlpdhvrvveissndswfrdigptfvvrretdaehriagidwtfnswggledgcyc
dwsldslvkkkildveriprfshsmvleggsihvdgegtcitteecllnknrnphlsksq
iedelkaylgvrkviwlprglygdddtnghvdnmccfvrpgavllswtddktdpqyerse
eayslfssvtdangrkfeviklhvpgplymtekeaagvfqddgakprlpgtrlaasyvnf
yiangaiiapqfgdkkwddeairvlsktfphhevvgiegsreivlsggnihcitqqqpai