PDB entry 6mtn
View 6mtn on RCSB PDB site
Description: Crystal Structure of HIV-1 BG505 SOSIP.664 Prefusion Env Trimer Bound to Small Molecule HIV-1 Entry Inhibitor Compound 484 in Complex with Human Antibodies 3H109L and 35O22 at 3.0 Angstrom
Class: immune system/inhibitor
Keywords: HIV-1 Envelope Prefusion Trimer, Entry Inhibitors, IMMUNE SYSTEM-INHIBITOR complex
Deposited on
2018-10-20, released
2019-01-16
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-07-29, with a file datestamp of
2020-07-04.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.24
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'B':
Compound: envelope glycoprotein gp160
Species: Human immunodeficiency virus 1 [TaxId:11676]
Gene: ENV
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: 35O22 scFv heavy chain portion
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6mtnd_ - Chain 'E':
Compound: 35O22 scFv light chain portion
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6mtne_ - Chain 'G':
Compound: envelope glycoprotein gp160
Species: Human immunodeficiency virus 1 [TaxId:11676]
Gene: ENV
Database cross-references and differences (RAF-indexed):
- Uniprot Q2N0S6
- engineered mutation (106)
- conflict (300)
- conflict (468)
- Chain 'H':
Compound: 3H109L Fab heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6mtnh1, d6mtnh2 - Chain 'L':
Compound: 3H109L Fab light chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6mtnl1, d6mtnl2 - Heterogens: JYJ, NAG, HOH
PDB Chain Sequences:
- Chain 'B':
No sequence available.
- Chain 'D':
Sequence, based on SEQRES records: (download)
>6mtnD (D:)
qgqlvqsgatttkpgssvkiscktsgyrfnfyhinwirqtagrgpewmgwispysgdknl
apafqdrvnmttdtevpvtsftstgaaymeirnltsddtgtyfcakgllrdgsstwlpyl
wgqgtlltvssast
Sequence, based on observed residues (ATOM records): (download)
>6mtnD (D:)
qgqlvqsgatttkpgssvkiscktsgyrfnfyhinwirqtagrgpewmgwispysgdknl
apafqdrvnmttdtevpvtsftstgaaymeirnltsddtgtyfcakgllrdgsstwlpyl
wgqgtllt
- Chain 'E':
Sequence, based on SEQRES records: (download)
>6mtnE (E:)
sqsvltqsasvsgslgqsvtisctgpnsvccshksiswyqwppgraptliiyednerapg
isprfsgyksywsayltisdlrpedettyyccsythnsgcvfgtgtkvsvlgqs
Sequence, based on observed residues (ATOM records): (download)
>6mtnE (E:)
vltqsasvsgslgqsvtisctgpnsvccshksiswyqwppgraptliiyednerapgisp
rfsgyksywsayltisdlrpedettyyccsythnsgcvfgtgtkv
- Chain 'G':
No sequence available.
- Chain 'H':
Sequence, based on SEQRES records: (download)
>6mtnH (H:)
qvqlqesgpglvkpsetlsltctvsggsisnyywswirqspgkglewigyisdsestnyn
pslksrviisvdtsknqlslklnsvtaadsaiyycaraqqgkriygmvsfgeffyyyymd
vwgkgttvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgalts
gvhtfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscdkgle
vlfq
Sequence, based on observed residues (ATOM records): (download)
>6mtnH (H:)
qvqlqesgpglvkpsetlsltctvsggsisnyywswirqspgkglewigyisdsestnyn
pslksrviisvdtsknqlslklnsvtaadsaiyycaraqqgkriygmvsfgeffyyyymd
vwgkgttvtvssastkgpsvfplapsgtaalgclvkdyfpepvtvswnsgaltsgvhtfp
avlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvep
- Chain 'L':
Sequence, based on SEQRES records: (download)
>6mtnL (L:)
svtsyvrplsvalgetasiscgrqalgsravqwyqhrpgqapilliynnqdrpsgiperf
sgtpdinfgtratltisgveagdeadyychmwdsrsgfswsfggatrltvlgqpkaapsv
tlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaas
sylsltpmqwkmhksyscqvthegstvektvaptecs
Sequence, based on observed residues (ATOM records): (download)
>6mtnL (L:)
syvrplsvalgetasiscgrqalgsravqwyqhrpgqapilliynnqdrpsgiperfsgt
pdinfgtratltisgveagdeadyychmwdsrsgfswsfggatrltvlgqpkaapsvtlf
ppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaassyl
sltpmqwkmhksyscqvthegstvektvapt