PDB entry 6mnm

View 6mnm on RCSB PDB site
Description: 6256 TCR bound to I-Ab Padi4
Class: immune system
Keywords: T cell receptor, Major Histocompatibility Complex, IMMUNE SYSTEM
Deposited on 2018-10-02, released 2019-07-03
The last revision prior to the SCOPe 2.07 freeze date was dated 2019-07-03, with a file datestamp of 2019-06-28.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: N/A
AEROSPACI score: 0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 6256 TCR alpha chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6MNM
    Domains in SCOPe 2.07: d6mnma1, d6mnma2
  • Chain 'B':
    Compound: 6256 TCR beta chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6MNM (0-238)
    Domains in SCOPe 2.07: d6mnmb1, d6mnmb2
  • Chain 'C':
    Compound: H-2 class II histocompatibility antigen, A-B alpha chain
    Species: Mus musculus [TaxId:10090]
    Gene: H2-Aa
    Database cross-references and differences (RAF-indexed):
    • Uniprot P14434 (1-179)
      • expression tag (0)
    Domains in SCOPe 2.07: d6mnmc1, d6mnmc2, d6mnmc3
  • Chain 'D':
    Compound: Padi4 (92-105) peptide and MHC Class II I-Ab beta chain
    Species: Mus musculus [TaxId:10090]
    Gene: H2-Ab1, H2-iabeta
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6mnmA (A:)
mqqvrqspqsltvwegetailncsyensafdyfpwyqqfpgegpalliairsvsdkkedg
rftiffnkrekklslhitdsqpgdsatyfcaasatgantgkltfghgtilrvhpniqnpd
pavyqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavaws
nksdfacanafnnsiipedtffpspess

    Sequence, based on observed residues (ATOM records): (download) 
    >6mnmA (A:)
qvrqspqsltvwegetailncsyensafdyfpwyqqfpgegpalliairsvsdkkedgrf
tiffnkrekklslhitdsqpgdsatyfcaasatgantgkltfghgtilrvhpniqnpdpa
vyqlrdskksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsndfac
anafnnsiipedtffp

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6mnmB (B:)
avtqsprnkvavtggkvtlscnqtnnhnnmywyrqdtghglrlihysygagstekgdipd
gykasrpsqenfslilelatpsqtsvyfcasgdfwgdtlyfgagtrlsvledlknvfppe
vavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplkeqpaln
dsryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeawgra

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6mnmC (C:)
aieadhvgtygisvyqspgdigqytfefdgdelfyvdldkketvwmlpefgqlasfdpqg
glqniavvkhnlgvltkrsnstpatneapqatvfpkspvllgqpntlicfvdnifppvin
itwlrnsksvadgvyetsffvnrdysfhklsyltfipsdddiydckvehwgleepvlkhw

    Sequence, based on observed residues (ATOM records): (download) 
    >6mnmC (C:)
aieadhvgtygisvyqspgdigqytfefdgdelfyvdldkketvwmlpefgqlasfdpqg
glqniavvkhnlgvltkrsnstpatneapqatvfpkspvllgqpntlicfvdnifppvin
itwlrnsksvagvyetsffvnrdysfhklsyltfipsdddiydckvehwgleepvlkhw

  • Chain 'D':
    No sequence available.