PDB entry 6mgy

View 6mgy on RCSB PDB site
Description: Crystal Structure of the New Deli Metallo Beta Lactamase Variant 5 from Klebsiella pneumoniae
Class: hydrolase
Keywords: metallo beta lactamase, Carbapenemases, Structural Genomics, Center for Structural Genomics of Infectious Diseases, CSGID, HYDROLASE
Deposited on 2018-09-16, released 2018-10-03
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: N/A
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Metallo-beta-lactamase NDM-5
    Species: Klebsiella pneumoniae [TaxId:573]
    Gene: blaNDM-5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6mgya_
  • Chain 'B':
    Compound: Metallo-beta-lactamase NDM-5
    Species: Klebsiella pneumoniae [TaxId:573]
    Gene: blaNDM-5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6mgyb_
  • Chain 'C':
    Compound: Metallo-beta-lactamase NDM-5
    Species: Klebsiella pneumoniae [TaxId:573]
    Gene: blaNDM-5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6mgyc_
  • Chain 'D':
    Compound: Metallo-beta-lactamase NDM-5
    Species: Klebsiella pneumoniae [TaxId:573]
    Gene: blaNDM-5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6mgyd_
  • Heterogens: ZN, K, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >6mgyA (A:)
    snairptigqqmetgdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrvl
    lvdtawtddqtaqilnwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsnq
    lapqeglvaaqhsltfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafgg
    clikdskakslgnlgdadtehyaasarafgaafpkasmivmshsapdsraaithtarmad
    klr
    

    Sequence, based on observed residues (ATOM records): (download)
    >6mgyA (A:)
    tgdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrvllvdtawtddqtaq
    ilnwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsnqlapqeglvaaqhs
    ltfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafggclikdskakslgn
    lgdadtehyaasarafgaafpkasmivmshsapdsraaithtarmadklr
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >6mgyB (B:)
    snairptigqqmetgdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrvl
    lvdtawtddqtaqilnwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsnq
    lapqeglvaaqhsltfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafgg
    clikdskakslgnlgdadtehyaasarafgaafpkasmivmshsapdsraaithtarmad
    klr
    

    Sequence, based on observed residues (ATOM records): (download)
    >6mgyB (B:)
    gdqrfgdlvfrqlapnvwqhtsyldmgavasnglivrdggrvllvdtawtddqtaqilnw
    ikqeinlpvalavvthahqdkmggmdalhaagiatyanalsnqlapqeglvaaqhsltfa
    angwvepatapnfgplkvfypgpghtsdnitvgidgtdiafggclikdskakslgnlgda
    dtehyaasarafgaafpkasmivmshsapdsraaithtarmadklr
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >6mgyC (C:)
    snairptigqqmetgdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrvl
    lvdtawtddqtaqilnwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsnq
    lapqeglvaaqhsltfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafgg
    clikdskakslgnlgdadtehyaasarafgaafpkasmivmshsapdsraaithtarmad
    klr
    

    Sequence, based on observed residues (ATOM records): (download)
    >6mgyC (C:)
    ptigqqmetgdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrvllvdta
    wtddqtaqilnwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsnqlapqe
    glvaaqhsltfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafggclikd
    skakslgnlgdadtehyaasarafgaafpkasmivmshsapdsraaithtarmadklr
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >6mgyD (D:)
    snairptigqqmetgdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrvl
    lvdtawtddqtaqilnwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsnq
    lapqeglvaaqhsltfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafgg
    clikdskakslgnlgdadtehyaasarafgaafpkasmivmshsapdsraaithtarmad
    klr
    

    Sequence, based on observed residues (ATOM records): (download)
    >6mgyD (D:)
    gdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrvllvdtawtddqtaqi
    lnwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsnqlapqeglvaaqhsl
    tfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafggclikdskakslgnl
    gdadtehyaasarafgaafpkasmivmshsapdsraaithtarmadklr