PDB entry 6m6l

View 6m6l on RCSB PDB site
Description: The crystal structure of glycosidase hydrolyzing Notoginsenoside
Class: hydrolase
Keywords: Glycosidase, Notoginsenoside, HYDROLASE
Deposited on 2020-03-15, released 2021-03-17
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-03-17, with a file datestamp of 2021-03-12.
Experiment type: XRAY
Resolution: 1.5 Å
R-factor: N/A
AEROSPACI score: 0.57 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Beta-glucosidase
    Species: Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) [TaxId:479435]
    Gene: Kfla_5268
    Database cross-references and differences (RAF-indexed):
    • Uniprot D2PL27 (1-446)
      • expression tag (0)
    Domains in SCOPe 2.08: d6m6la1, d6m6la2
  • Chain 'B':
    Compound: Beta-glucosidase
    Species: Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) [TaxId:479435]
    Gene: Kfla_5268
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6m6lb_
  • Heterogens: EDO, GOL, XYP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6m6lA (A:)
fmvelsplrqdfvwgtatsayqiegavaddgrlpsiwdtfcrvpgaidngdtgdvacdsy
hrwpedlallkqlgvdayrfsiawprviptgsgavntagldyydrvvddllaegikpfvt
lyhwdlpqalqdlggwdnrdtayrfaeyaavvgaklgdrvrdwvtlneplcsawighweg
rmapgitdpaiavrasynlllahglgvaalrdacpeppavglvvnlsgcepasqspedir
aariadghinrwwldptsgrgfpadmvetygvelperpgdleiiaaptdfiglnyyfrqi
ieadgsvpvlgfsqvpgpnaehtmidwevhpagleelilrlakeygaekiyvtengsawv
dqpdaefavddpdrtayleehlaacvraveqgaplagyfawslmdnfewaygyaprfgla
yvdyptgtrvmktsgkryadlirghre

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6m6lB (B:)
fmvelsplrqdfvwgtatsayqiegavaddgrlpsiwdtfcrvpgaidngdtgdvacdsy
hrwpedlallkqlgvdayrfsiawprviptgsgavntagldyydrvvddllaegikpfvt
lyhwdlpqalqdlggwdnrdtayrfaeyaavvgaklgdrvrdwvtlneplcsawighweg
rmapgitdpaiavrasynlllahglgvaalrdacpeppavglvvnlsgcepasqspedir
aariadghinrwwldptsgrgfpadmvetygvelperpgdleiiaaptdfiglnyyfrqi
ieadgsvpvlgfsqvpgpnaehtmidwevhpagleelilrlakeygaekiyvtengsawv
dqpdaefavddpdrtayleehlaacvraveqgaplagyfawslmdnfewaygyaprfgla
yvdyptgtrvmktsgkryadlirghre

    Sequence, based on observed residues (ATOM records): (download) 
    >6m6lB (B:)
velsplrqdfvwgtatsayqiegavaddgrlpsiwdtfcrvpgaidngdtgdvacdsyhr
wpedlallkqlgvdayrfsiawprviptgsgavntagldyydrvvddllaegikpfvtly
hwdlpqalqdlggwdnrdtayrfaeyaavvgaklgdrvrdwvtlneplcsawighwegrm
apgitdpaiavrasynlllahglgvaalrdacpeppavglvvnlsgcepasqspediraa
riadghinrwwldptsgrgfpadmvetygvelperpgdleiiaaptdfiglnyyfrqiie
adgsvpvlgfsqvpgpnaehtmidwevhpagleelilrlakeygaekiyvtengsawvdq
pdaefavddpdrtayleehlaacvraveqgaplagyfawslmdnfewaygyaprfglayv
dyptgtrvmktsgkryadlirghre