PDB entry 6lz2

View 6lz2 on RCSB PDB site
Description: Crystal structure of a thermostable green fluorescent protein (TGP) with a synthetic nanobody (Sb44)
Class: fluorescent protein
Keywords: complex, GFP, nanobody, single-chain antibody, sybody, synthetic antibody, TGP, thermostable green fluorescent protein, FLUORESCENT PROTEIN
Deposited on 2020-02-17, released 2020-12-23
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-12-23, with a file datestamp of 2020-12-18.
Experiment type: XRAY
Resolution: 2.03 Å
R-factor: N/A
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Thermostable green fluorescent protein
    Species: Galaxea fascicularis [TaxId:46745]
    Gene: Green fluorescent GFP-like protein
    Database cross-references and differences (RAF-indexed):
    • PDB 6LZ2
    Domains in SCOPe 2.08: d6lz2a_
  • Chain 'B':
    Compound: synthetic nanobody (sybody) 44 against the thermostable green fluorescent protein (TGP)
    Species: Lama glama [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LZ2
    Domains in SCOPe 2.08: d6lz2b_
  • Chain 'C':
    Compound: Thermostable green fluorescent protein
    Species: Galaxea fascicularis [TaxId:46745]
    Gene: Green fluorescent GFP-like protein
    Database cross-references and differences (RAF-indexed):
    • PDB 6LZ2
    Domains in SCOPe 2.08: d6lz2c_
  • Chain 'D':
    Compound: synthetic nanobody (sybody) 44 against the thermostable green fluorescent protein (TGP)
    Species: Lama glama [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LZ2
    Domains in SCOPe 2.08: d6lz2d1, d6lz2d2
  • Heterogens: CRQ, NA, ACT, GOL, TRS, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6lz2A (A:)
masvikpemkiklrmegavnghkfviegegigkpyegtqtldltveegaplpfsydiltp
afqygnraftkypedipdyfkqafpegyswersmtyedqgiciatsditmegdcffyeir
fdgtnfppngpvmqkktlkwepstekmyvedgvlkgdvemallleggghyrcdfkttyka
kkdvrlpdahevdhrieilshdkdynkvrlyehaearysgggsggghhhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6lz2A (A:)
asvikpemkiklrmegavnghkfviegegigkpyegtqtldltveegaplpfsydiltpa
fqygnraftkypedipdyfkqafpegyswersmtyedqgiciatsditmegdcffyeirf
dgtnfppngpvmqkktlkwepstekmyvedgvlkgdvemallleggghyrcdfkttykak
kdvrlpdahevdhrieilshdkdynkvrlyehaearys

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6lz2B (B:)
gsssqvqlvesggglvqaggslrlscaasgfpvgrasmwwyrqapgkerewvaaissygw
vtayadsvkgrftisrdnakntvylqmnslkpedtavyycevsvgtgyrgqgtqvtvsag
rageqkliseedlnsavdhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6lz2B (B:)
sqvqlvesggglvqaggslrlscaasgfpvgrasmwwyrqapgkerewvaaissygwvta
yadsvkgrftisrdnakntvylqmnslkpedtavyycevsvgtgyrgqgtqvtvsag

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6lz2C (C:)
masvikpemkiklrmegavnghkfviegegigkpyegtqtldltveegaplpfsydiltp
afqygnraftkypedipdyfkqafpegyswersmtyedqgiciatsditmegdcffyeir
fdgtnfppngpvmqkktlkwepstekmyvedgvlkgdvemallleggghyrcdfkttyka
kkdvrlpdahevdhrieilshdkdynkvrlyehaearysgggsggghhhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6lz2C (C:)
asvikpemkiklrmegavnghkfviegegigkpyegtqtldltveegaplpfsydiltpa
fqygnraftkypedipdyfkqafpegyswersmtyedqgiciatsditmegdcffyeirf
dgtnfppngpvmqkktlkwepstekmyvedgvlkgdvemallleggghyrcdfkttykak
kdvrlpdahevdhrieilshdkdynkvrlyehaearysgg

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6lz2D (D:)
gsssqvqlvesggglvqaggslrlscaasgfpvgrasmwwyrqapgkerewvaaissygw
vtayadsvkgrftisrdnakntvylqmnslkpedtavyycevsvgtgyrgqgtqvtvsag
rageqkliseedlnsavdhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6lz2D (D:)
vqlvesggglvqaggslrlscaasgfpvgrasmwwyrqapgkerewvaaissygwvtaya
dsvkgrftisrdnakntvylqmnslkpedtavyycevsvgtgyrgqgtqvtvsagrage