PDB entry 6ly5
View 6ly5 on RCSB PDB site
Description: Organization and energy transfer in a huge diatom PSI-FCPI supercomplex
Class: photosynthesis
Keywords: diatom, PSI-FCPI, photosysyem, photosynthesis
Deposited on
2020-02-13, released
2020-10-21
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-10-21, with a file datestamp of
2020-10-16.
Experiment type: EM
Resolution: 2.38 Å
R-factor: N/A
AEROSPACI score: 0.29
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: fcpi-7
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: fcpi-1
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: fcpi-11
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: fcpi-6
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
- Chain 'E':
Compound: fcpi-5
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
- Chain 'F':
Compound: fcpi-8
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
- Chain 'G':
Compound: fcpi-4
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: fcpi-10
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
- Chain 'I':
Compound: fcpi-3
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
- Chain 'J':
Compound: fcpi-9
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
- Chain 'K':
Compound: fcpi-13
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
- Chain 'L':
Compound: fcpi-14
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
- Chain 'M':
Compound: fcpi-16
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
- Chain 'N':
Compound: fcpi-21
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
- Chain 'O':
Compound: fcpi
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
- Chain 'P':
Compound: fcpi
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
- Chain 'Q':
Compound: fcpi
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
- Chain 'R':
Compound: fcpi-24
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
- Chain 'S':
Compound: fcpi-23
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
- Chain 'T':
Compound: fcpi-12
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
- Chain 'U':
Compound: fcpi-2
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
- Chain 'V':
Compound: fcpi-19
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
- Chain 'W':
Compound: fcpi-17
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
- Chain 'X':
Compound: fcpi-17
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
- Chain 'a':
Compound: PsaA
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6ly5a_ - Chain 'b':
Compound: PsaB
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6ly5b_ - Chain 'c':
Compound: PsaC
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6ly5c_ - Chain 'd':
Compound: PsaD
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6ly5d_ - Chain 'e':
Compound: PsaE
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6ly5e_ - Chain 'f':
Compound: PsaF
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6ly5f1, d6ly5f2 - Chain 'g':
Compound: PsaS
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
- Chain 'h':
Compound: PsaR
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
- Chain 'i':
Compound: PsaI
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
- Chain 'j':
Compound: PsaJ
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6ly5j_ - Chain 'l':
Compound: PsaL
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
- Chain 'm':
Compound: PsaM
Species: Chaetoceros gracilis [TaxId:184592]
Database cross-references and differences (RAF-indexed):
- Heterogens: SF4, PQN, DD6, A86, CLA, KC1, SQD, LMT, DGD, LHG, LMG, BCR, HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
No sequence available.
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.
- Chain 'E':
No sequence available.
- Chain 'F':
No sequence available.
- Chain 'G':
No sequence available.
- Chain 'H':
No sequence available.
- Chain 'I':
No sequence available.
- Chain 'J':
No sequence available.
- Chain 'K':
No sequence available.
- Chain 'L':
No sequence available.
- Chain 'M':
No sequence available.
- Chain 'N':
No sequence available.
- Chain 'O':
No sequence available.
- Chain 'P':
No sequence available.
- Chain 'Q':
No sequence available.
- Chain 'R':
No sequence available.
- Chain 'S':
No sequence available.
- Chain 'T':
No sequence available.
- Chain 'U':
No sequence available.
- Chain 'V':
No sequence available.
- Chain 'W':
No sequence available.
- Chain 'X':
No sequence available.
- Chain 'a':
Sequence, based on SEQRES records: (download)
>6ly5a (a:)
aknvqifvekdavetsfekwsqpghfsrtlakgpktttwiwnlhadahdfdsqtnsleev
srkifsahfgqlaaiflwisgmhfhgayfsnysawlsdpikikqssqvvwpivgqeilna
dvggnfqgvqttsgwfqmwraegitsevelywiaigglimsalmlfagwfhyhkaapkle
wfqnaesmmnhhlagllglgclswsghqihialpinklldagvspqeiplpheflinrdl
maqlypsfekgltpffsgqwgvysdfltfkgglnpvtgglwlsdiahhhlalsvlfiiag
hmyrtnwgighsmkeileahkgpftgeghkglyeilttswhaqlainlamigslsiivah
hmyamppypyiatdyatqlslfthhmwiggfcvvggaahgaifmvrdytpannynnlldr
dlrhrdeiisnlnwvciflgchafgfyihndtmralgrpqdmfsdkaiqlqpifaqwiqn
ihllapgttapnalattsyafggdivevggkiammpiklgtadfmvhhihaftihvtvli
llkgvlyarssklipdkanlgfrfpcdgpgrggtcqssswdhvflglfwmynaisvvifh
fswkmqsdvwgtvtadgsishitggnfaqssitingwlrdflwsqasqviqsygsassay
gliflgahfiwafslmflfsgrgywqeliesivwahnklnfapaiqpralsitqgravgl
ahyllggigttwafflarslsit
Sequence, based on observed residues (ATOM records): (download)
>6ly5a (a:)
knvqifvekdavetsfekwsqpghfsrtlakgpktttwiwnlhadahdfdsqtnsleevs
rkifsahfgqlaaiflwisgmhfhgayfsnysawlsdpikikqssqvvwpivgqeilnad
vggnfqgvqttsgwfqmwraegitsevelywiaigglimsalmlfagwfhyhkaapklew
fqnaesmmnhhlagllglgclswsghqihialpinklldagvspqeiplpheflinrdlm
aqlypsfekgltpffsgqwgvysdfltfkgglnpvtgglwlsdiahhhlalsvlfiiagh
myrtnwgighsmkeileahkgpftgeghkglyeilttswhaqlainlamigslsiivahh
myamppypyiatdyatqlslfthhmwiggfcvvggaahgaifmvrdytpannynnlldrd
lrhrdeiisnlnwvciflgchafgfyihndtmralgrpqdmfsdkaiqlqpifaqwiqni
hllapgttapnalattsyafggdivevggkiammpiklgtadfmvhhihaftihvtvlil
lkgvlyarssklipdkanlgfrfpcdgpgrggtcqssswdhvflglfwmynaisvvifhf
swkmqsdvwgtvtadgsishitggnfaqssitingwlrdflwsqasqviqsygsassayg
liflgahfiwafslmflfsgrgywqeliesivwahnklnfapaiqpralsitqgravgla
hyllggigttwafflarslsit
- Chain 'b':
Sequence, based on SEQRES records: (download)
>6ly5b (b:)
matkfpkfsqalaqdpatrriwygiatahdleahdgmteenlyqkifashfghlaiiflw
tagnlfhvawqgnfeqwvakplktkpiahsiwdphfgesalkafskgntypvniafsgvy
qwwytigfrtnqelyagsigllilscvllfagwlhlqpkfrpslswfknnesrlnhhlsg
llgvsslawtghlvhvalpasrgvhigwdnflttpphpaglkpfftgnwtvyaenpdsat
hvygtsegagtailtflggfhpqtqslwlsdiahhqlaiavifivaghmyrtnfgighnm
keildahrppggrlgaghvglfetitnslhmqlglalaalgvatsltaqhmyaltpyayl
skdftteaalythhqyiagflmvgafahgaiffvrdydpelnknnvlarmlehkeaiish
lswaslflgfhtlglyihndtvvafgqpekqilfepifaeyiqaasgkavyefnvllsss
sspatvagnqvwlpgwleainnnkndlflkigpgdflvhhaialglhvtalilvkgalda
rgsklmpdkkdfgysfpcdgpgrggtcdisawdafylamfwmlntigwvtfywhwkhmti
wggnpgqfdessnyimgwlrdylwlnssplingynpfgmnnlsvwawmflfghliwatgf
mfliswrgywqelietlvwahertplanlirwrdkpvalsivqarlvglvhfsvgyilty
aafliastsgkfg
Sequence, based on observed residues (ATOM records): (download)
>6ly5b (b:)
atkfpkfsqalaqdpatrriwygiatahdleahdgmteenlyqkifashfghlaiiflwt
agnlfhvawqgnfeqwvakplktkpiahsiwdphfgesalkafskgntypvniafsgvyq
wwytigfrtnqelyagsigllilscvllfagwlhlqpkfrpslswfknnesrlnhhlsgl
lgvsslawtghlvhvalpasrgvhigwdnflttpphpaglkpfftgnwtvyaenpdsath
vygtsegagtailtflggfhpqtqslwlsdiahhqlaiavifivaghmyrtnfgighnmk
eildahrppggrlgaghvglfetitnslhmqlglalaalgvatsltaqhmyaltpyayls
kdftteaalythhqyiagflmvgafahgaiffvrdydpelnknnvlarmlehkeaiishl
swaslflgfhtlglyihndtvvafgqpekqilfepifaeyiqaasgkavyefnvllssss
spatvagnqvwlpgwleainnnkndlflkigpgdflvhhaialglhvtalilvkgaldar
gsklmpdkkdfgysfpcdgpgrggtcdisawdafylamfwmlntigwvtfywhwkhmtiw
ggnpgqfdessnyimgwlrdylwlnssplingynpfgmnnlsvwawmflfghliwatgfm
fliswrgywqelietlvwahertplanlirwrdkpvalsivqarlvglvhfsvgyiltya
afliastsgkfg
- Chain 'c':
Sequence; same for both SEQRES and ATOM records: (download)
>6ly5c (c:)
shsvkiydtcigctqcvracptdvlemipwggckakqiasaprtedcvgckrcesacptd
flsvrvylwhettrsmglay
- Chain 'd':
Sequence; same for both SEQRES and ATOM records: (download)
>6ly5d (d:)
pspifggstggwlrkaqveekyvitwdspkeqifemptggaaimregpnllklarkeqcl
algtrlrskykikyqfyrvfpngevqylhpkdgvypekvnagrqgvgqnfrsigknvspi
evkftgkqpydl
- Chain 'e':
Sequence; same for both SEQRES and ATOM records: (download)
>6ly5e (e:)
gpkrgakvkilrkesywykgtgsvvavdqdpntrypvvvrfnkvnyanvstnnyaldeiq
eve
- Chain 'f':
Sequence; same for both SEQRES and ATOM records: (download)
>6ly5f (f:)
disgltpckeskqfakrekqalkklqaslklyaddsapalaikatmektkkrfdnygkyg
llcgsdglphlivsgdqrhwgefitpgilflyiagwigwvgrsyliairdekkptqkeii
idvplasrllfrgfswpvaayrellngelvdaaaaaaaaaaa
- Chain 'g':
No sequence available.
- Chain 'h':
No sequence available.
- Chain 'i':
No sequence available.
- Chain 'j':
Sequence, based on SEQRES records: (download)
>6ly5j (j:)
mrdlktylsvapvastlwfaalagllieinrlfpdaltfpff
Sequence, based on observed residues (ATOM records): (download)
>6ly5j (j:)
mrdlktylsvapvastlwfaalagllieinrlfpdaltfpf
- Chain 'l':
No sequence available.
- Chain 'm':
No sequence available.