PDB entry 6l9l

View 6l9l on RCSB PDB site
Description: 1D4 TCR recognition of H2-Ld a1a2 A5 Peptide Complexes
Class: immune system
Keywords: Major Histocompatibility Complex, T Cell Receptor, IMMUNE SYSTEM
Deposited on 2019-11-10, released 2020-11-18
The last revision prior to the SCOPe 2.07 freeze date was dated 2020-11-18, with a file datestamp of 2020-11-13.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: H2-Ld a1a2
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6L9L (0-174)
    Domains in SCOPe 2.07: d6l9la_
  • Chain 'B':
    Compound: ser-pro-ser-tyr-ala-tyr-his-gln-phe
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6L9L (0-8)
  • Chain 'C':
    Compound: t cell receptor
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6L9L (0-197)
    Domains in SCOPe 2.07: d6l9lc1, d6l9lc2
  • Chain 'D':
    Compound: t cell receptor
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6L9L (0-238)
    Domains in SCOPe 2.07: d6l9ld1, d6l9ld2
  • Chain 'E':
    Compound: H2-Ld a1a2
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6L9L (0-174)
    Domains in SCOPe 2.07: d6l9le_
  • Chain 'F':
    Compound: ser-pro-ser-tyr-ala-tyr-his-gln-phe
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6L9L (0-8)
  • Chain 'G':
    Compound: t cell receptor
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6L9L (0-197)
    Domains in SCOPe 2.07: d6l9lg1, d6l9lg2
  • Chain 'H':
    Compound: t cell receptor
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6L9L (0-238)
    Domains in SCOPe 2.07: d6l9lh1, d6l9lh2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6l9lA (A:)
gphsmryyetatsrrglgeprytsvgyvddkefvrfdsdaenpryepqvpwmeqegpeyw
eritqiakgqeqwfrvnlrtllgyynqsaggthtlqrmygcdvgsdgrllrgyeqfaydg
cdyialnedlrtwtaadmaaqitrrkweqagaaeyyraylegecvewlhrylkng

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6l9lC (C:)
akttqpdsmestegetvhlpcshatisgneyiywyrqvplqgpeyvthglqqnttnsmaf
laiasdrksstlilthvslrdaavyhcilqgtgsklsfgkgakltvspdiqnpdpavyql
rdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsnksdfa
canafnnsiipedtffps

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6l9lD (D:)
avtqsprnkvtvtggnvtlscrqtnshnymywyrqdtghglrlihysygagnlqigdvpd
gykatrttqedfflllelaspsqtslyfcassdgdyeqyfgpgtrltvledlknvfppev
avfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplkeqpalnd
sryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeawgrad

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6l9lE (E:)
gphsmryyetatsrrglgeprytsvgyvddkefvrfdsdaenpryepqvpwmeqegpeyw
eritqiakgqeqwfrvnlrtllgyynqsaggthtlqrmygcdvgsdgrllrgyeqfaydg
cdyialnedlrtwtaadmaaqitrrkweqagaaeyyraylegecvewlhrylkng

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6l9lG (G:)
akttqpdsmestegetvhlpcshatisgneyiywyrqvplqgpeyvthglqqnttnsmaf
laiasdrksstlilthvslrdaavyhcilqgtgsklsfgkgakltvspdiqnpdpavyql
rdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsnksdfa
canafnnsiipedtffps

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6l9lH (H:)
avtqsprnkvtvtggnvtlscrqtnshnymywyrqdtghglrlihysygagnlqigdvpd
gykatrttqedfflllelaspsqtslyfcassdgdyeqyfgpgtrltvledlknvfppev
avfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplkeqpalnd
sryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeawgrad