PDB entry 6khp

View 6khp on RCSB PDB site
Description: Crystal structure of Oryza sativa TDC with PLP and tryptamine
Class: lyase
Keywords: amino acid decarboxylase, TRANSFERASE, LYASE
Deposited on 2019-07-16, released 2020-07-15
The last revision prior to the SCOPe 2.07 freeze date was dated 2020-07-15, with a file datestamp of 2020-07-10.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Tryptophan decarboxylase 1
    Species: Oryza sativa subsp. japonica [TaxId:39947]
    Gene: TDC1, Os08g0140300, LOC_Os08g04540, OJ1368_G08.14, OsJ_25993
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6khpa_
  • Chain 'B':
    Compound: Tryptophan decarboxylase 1
    Species: Oryza sativa subsp. japonica [TaxId:39947]
    Gene: TDC1, Os08g0140300, LOC_Os08g04540, OJ1368_G08.14, OsJ_25993
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6khpb_
  • Heterogens: PLP, TSS, CA, ACT, PEG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6khpA (A:)
mgsldtnptafsafpagegetfqplnaddvrsylhkavdfisdyyksvesmpvlpnvkpg
ylqdelraspptysapfdvtmkelrssvvpgmthwaspnffaffpstnsaaaiagdlias
amntvgftwqaspaatemevlaldwlaqmlnlptsfmnrtgegrgtgggvilgttseaml
vtlvaardaalrrsgsdgvaglhrlavyaadqthstffkacrlagfdpanirsiptgaet
dygldparlleamqadadaglvptyvcatvgttssnavdpvgavadvaarfaawvhvdaa
yagsacicpefrhhldgvervdsismsphkwlmtcldctclyvrdthrltgsletnpeyl
knhasdsgevtdlkdmqvgvgrrfrglklwmvmrtygvaklqehirsdvamakvfedlvr
gddrfevvvprnfalvcfriragagaaaateedadeanrelmerlnktgkayvahtvvgg
rfvlrfavgsslqeehhvrsawelikktttemmn

    Sequence, based on observed residues (ATOM records): (download) 
    >6khpA (A:)
tfqplnaddvrsylhkavdfisdyyksvesmpvlpnvkpgylqdelraspptysapfdvt
mkelrssvvpgmthwaspnffaffpstnsaaaiagdliasamntvgftwqaspaatemev
laldwlaqmlnlptsfmngrgtgggvilgttseamlvtlvaardaalrrsgsdgvaglhr
lavyaadqthstffkacrlagfdpanirsiptgaetdygldparlleamqadadaglvpt
yvcatvgttssnavdpvgavadvaarfaawvhvdaayagsacicpefrhhldgvervdsi
smsphkwlmtcldctclyvrdthrltgsletnpeylknhasdsgevtdlkdmqvgvgrrf
rglklwmvmrtygvaklqehirsdvamakvfedlvrgddrfevvvprnfalvcfriraga
gaaaateedadeanrelmerlnktgkayvahtvvggrfvlrfavgsslqeehhvrsawel
ikktttemmn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6khpB (B:)
mgsldtnptafsafpagegetfqplnaddvrsylhkavdfisdyyksvesmpvlpnvkpg
ylqdelraspptysapfdvtmkelrssvvpgmthwaspnffaffpstnsaaaiagdlias
amntvgftwqaspaatemevlaldwlaqmlnlptsfmnrtgegrgtgggvilgttseaml
vtlvaardaalrrsgsdgvaglhrlavyaadqthstffkacrlagfdpanirsiptgaet
dygldparlleamqadadaglvptyvcatvgttssnavdpvgavadvaarfaawvhvdaa
yagsacicpefrhhldgvervdsismsphkwlmtcldctclyvrdthrltgsletnpeyl
knhasdsgevtdlkdmqvgvgrrfrglklwmvmrtygvaklqehirsdvamakvfedlvr
gddrfevvvprnfalvcfriragagaaaateedadeanrelmerlnktgkayvahtvvgg
rfvlrfavgsslqeehhvrsawelikktttemmn

    Sequence, based on observed residues (ATOM records): (download) 
    >6khpB (B:)
tfqplnaddvrsylhkavdfisdyyksvesmpvlpnvkpgylqdelraspptysapfdvt
mkelrssvvpgmthwaspnffaffpstnsaaaiagdliasamntvgftwqaspaatemev
laldwlaqmlnlptsfmnrtgegrgtgggvilgttseamlvtlvaardaalrrsgsdgva
glhrlavyaadqthstffkacrlagfdpanirsiptgaetdygldparlleamqadadag
lvptyvcatvgttssnavdpvgavadvaarfaawvhvdaayagsacicpefrhhldgver
vdsismsphkwlmtcldctclyvrdthrlgevtdlkdmqvgvgrrfrglklwmvmrtygv
aklqehirsdvamakvfedlvrgddrfevvvprnfalvcfriragagaaaateedadean
relmerlnktgkayvahtvvggrfvlrfavgsslqeehhvrsawelikktttemmn