PDB entry 6jll
View 6jll on RCSB PDB site
Description: XFEL structure of cyanobacterial photosystem II (2F state, dataset1)
Class: photosynthesis
Keywords: photosystem II, photosynthesis, PSII, membrane protein
Deposited on
2019-03-06, released
2019-10-16
The last revision prior to the SCOPe 2.07 freeze date was dated
2019-10-16, with a file datestamp of
2019-10-11.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: N/A
AEROSPACI score: 0.27
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Photosystem II protein D1
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Uniprot P51765 (Start-343)
- see sequence details (278)
- Chain 'B':
Compound: Photosystem II CP47 reaction center protein
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: Photosystem II CP43 reaction center protein
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: Photosystem II D2 protein
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d6jlld_ - Chain 'E':
Compound: Cytochrome b559 subunit alpha
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'F':
Compound: Cytochrome b559 subunit beta
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: Photosystem II reaction center protein H
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'I':
Compound: Photosystem II reaction center protein I
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'J':
Compound: Photosystem II reaction center protein J
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'K':
Compound: Photosystem II reaction center protein K
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Uniprot P19054 (0-36)
- see sequence details (23)
- see sequence details (29)
- Chain 'L':
Compound: Photosystem II reaction center protein L
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'M':
Compound: Photosystem II reaction center protein M
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'O':
Compound: Photosystem II manganese-stabilizing polypeptide
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'R':
Compound: Photosystem II protein Y
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'T':
Compound: Photosystem II reaction center protein T
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'U':
Compound: Photosystem II 12 kDa extrinsic protein
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'V':
Compound: cytochrome c-550
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'X':
Compound: Photosystem II reaction center protein X
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'Y':
Compound: Photosystem II reaction center protein ycf12
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'Z':
Compound: Photosystem II reaction center protein Z
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'a':
Compound: Photosystem II protein D1
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Uniprot P51765 (Start-343)
- see sequence details (278)
- Chain 'b':
Compound: Photosystem II CP47 reaction center protein
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'c':
Compound: Photosystem II CP43 reaction center protein
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Uniprot D0VWR7 (4-454)
- see sequence details (0-3)
- Chain 'd':
Compound: Photosystem II D2 protein
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'e':
Compound: Cytochrome b559 subunit alpha
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'f':
Compound: Cytochrome b559 subunit beta
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'h':
Compound: Photosystem II reaction center protein H
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'i':
Compound: Photosystem II reaction center protein I
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'j':
Compound: Photosystem II reaction center protein J
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'k':
Compound: Photosystem II reaction center protein K
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Uniprot P19054 (0-36)
- see sequence details (23)
- see sequence details (29)
- Chain 'l':
Compound: Photosystem II reaction center protein L
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'm':
Compound: Photosystem II reaction center protein M
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'o':
Compound: Photosystem II manganese-stabilizing polypeptide
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 't':
Compound: Photosystem II reaction center protein T
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'u':
Compound: Photosystem II 12 kDa extrinsic protein
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'v':
Compound: cytochrome c-550
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'x':
Compound: Photosystem II reaction center protein X
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'y':
Compound: Photosystem II reaction center protein ycf12
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Chain 'z':
Compound: Photosystem II reaction center protein Z
Species: Thermosynechococcus vulcanus [TaxId:32053]
Database cross-references and differences (RAF-indexed):
- Heterogens: FE2, CL, BCT, CLA, PHO, BCR, SQD, GOL, LMT, OEX, OEY, PL9, UNL, LMG, CA, HTG, DGD, LHG, HEM, MG, HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
No sequence available.
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence, based on SEQRES records: (download)
>6jllD (D:)
ergwfdilddwlkrdrfvfvgwsgillfpcaylalggwltgttfvtswythglassyleg
cnfltvavstpansmghsllllwgpeaqgdftrwcqlgglwtfialhgafgligfmlrqf
eiarlvgvrpynaiafsapiavfvsvfliyplgqsswffapsfgvaaifrfllffqgfhn
wtlnpfhmmgvagvlggallcaihgatventlfqdgegastfrafnptqaeetysmvtan
rfwsqifgiafsnkrwlhffmlfvpvtglwmsaigvvglalnlrsydfisqeiraaedpe
fetfytknlllnegirawmapqdqphenfvfpeevlprgnal
Sequence, based on observed residues (ATOM records): (download)
>6jllD (D:)
rgwfdilddwlkrdrfvfvgwsgillfpcaylalggwltgttfvtswythglassylegc
nfltvavstpansmghsllllwgpeaqgdftrwcqlgglwtfialhgafgligfmlrqfe
iarlvgvrpynaiafsapiavfvsvfliyplgqsswffapsfgvaaifrfllffqgfhnw
tlnpfhmmgvagvlggallcaihgatventlfqdgegastfrafnptqaeetysmvtanr
fwsqifgiafsnkrwlhffmlfvpvtglwmsaigvvglalnlrsydfisqeiraaedpef
etfytknlllnegirawmapqdqphenfvfpeevlprgnal
- Chain 'E':
No sequence available.
- Chain 'F':
No sequence available.
- Chain 'H':
No sequence available.
- Chain 'I':
No sequence available.
- Chain 'J':
No sequence available.
- Chain 'K':
No sequence available.
- Chain 'L':
No sequence available.
- Chain 'M':
No sequence available.
- Chain 'O':
No sequence available.
- Chain 'R':
No sequence available.
- Chain 'T':
No sequence available.
- Chain 'U':
No sequence available.
- Chain 'V':
No sequence available.
- Chain 'X':
No sequence available.
- Chain 'Y':
No sequence available.
- Chain 'Z':
No sequence available.
- Chain 'a':
No sequence available.
- Chain 'b':
No sequence available.
- Chain 'c':
No sequence available.
- Chain 'd':
No sequence available.
- Chain 'e':
No sequence available.
- Chain 'f':
No sequence available.
- Chain 'h':
No sequence available.
- Chain 'i':
No sequence available.
- Chain 'j':
No sequence available.
- Chain 'k':
No sequence available.
- Chain 'l':
No sequence available.
- Chain 'm':
No sequence available.
- Chain 'o':
No sequence available.
- Chain 't':
No sequence available.
- Chain 'u':
No sequence available.
- Chain 'v':
No sequence available.
- Chain 'x':
No sequence available.
- Chain 'y':
No sequence available.
- Chain 'z':
No sequence available.