PDB entry 6jjj

View 6jjj on RCSB PDB site
Description: Trimeric structure of Kupffer cell C-type lectin receptor Clec4f
Class: sugar binding protein
Keywords: C-type lectin receptor, Clec4f, Kupffer cell receptor, SUGAR BINDING PROTEIN
Deposited on 2019-02-26, released 2019-08-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-01-29, with a file datestamp of 2020-01-24.
Experiment type: XRAY
Resolution: 2.79 Å
R-factor: N/A
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: C-type lectin domain family 4 member F
    Species: Mus musculus [TaxId:10090]
    Gene: Clec4f, Clecsf13, Kclr
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6jjja_
  • Chain 'B':
    Compound: C-type lectin domain family 4 member F
    Species: Mus musculus [TaxId:10090]
    Gene: Clec4f, Clecsf13, Kclr
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6jjjb_
  • Chain 'C':
    Compound: C-type lectin domain family 4 member F
    Species: Mus musculus [TaxId:10090]
    Gene: Clec4f, Clecsf13, Kclr
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6jjjc_
  • Chain 'D':
    Compound: C-type lectin domain family 4 member F
    Species: Mus musculus [TaxId:10090]
    Gene: Clec4f, Clecsf13, Kclr
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6jjjd_
  • Chain 'E':
    Compound: C-type lectin domain family 4 member F
    Species: Mus musculus [TaxId:10090]
    Gene: Clec4f, Clecsf13, Kclr
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6jjje_
  • Chain 'F':
    Compound: C-type lectin domain family 4 member F
    Species: Mus musculus [TaxId:10090]
    Gene: Clec4f, Clecsf13, Kclr
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6jjjf_
  • Heterogens: CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6jjjA (A:)
galqeavaaqkqeqktqnqvlqliaqnwkyfngnfyyfsrdkkpwreaekfctsqgahla
svtsqeeqaflvqttssgdhwigltdqgtegiwrwvdgtpfnnaqskgfwgknqpdnwrh
rngeredcvhvrqqwndmacgssypwvckkstgwsaarvg

    Sequence, based on observed residues (ATOM records): (download) 
    >6jjjA (A:)
eavaaqkqeqktqnqvlqliaqnwkyfngnfyyfsrdkkpwreaekfctsqgahlasvts
qeeqaflvqttssgdhwigltdqgtegiwrwvdgtpfnnaqskgfwgknqpdnwrhrnge
redcvhvrqqwndmacgssypwvckkstgws

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6jjjB (B:)
galqeavaaqkqeqktqnqvlqliaqnwkyfngnfyyfsrdkkpwreaekfctsqgahla
svtsqeeqaflvqttssgdhwigltdqgtegiwrwvdgtpfnnaqskgfwgknqpdnwrh
rngeredcvhvrqqwndmacgssypwvckkstgwsaarvg

    Sequence, based on observed residues (ATOM records): (download) 
    >6jjjB (B:)
eavaaqkqeqktqnqvlqliaqnwkyfngnfyyfsrdkkpwreaekfctsqgahlasvts
qeeqaflvqttssgdhwigltdqgtegiwrwvdgtpfnnaqskgfwgknqpdnwrhrnge
redcvhvrqqwndmacgssypwvckkstgws

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6jjjC (C:)
galqeavaaqkqeqktqnqvlqliaqnwkyfngnfyyfsrdkkpwreaekfctsqgahla
svtsqeeqaflvqttssgdhwigltdqgtegiwrwvdgtpfnnaqskgfwgknqpdnwrh
rngeredcvhvrqqwndmacgssypwvckkstgwsaarvg

    Sequence, based on observed residues (ATOM records): (download) 
    >6jjjC (C:)
eavaaqkqeqktqnqvlqliaqnwkyfngnfyyfsrdkkpwreaekfctsqgahlasvts
qeeqaflvqttssgdhwigltdqgtegiwrwvdgtpfnnaqskgfwgknqpdnwrhrnge
redcvhvrqqwndmacgssypwvckkstgws

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6jjjD (D:)
galqeavaaqkqeqktqnqvlqliaqnwkyfngnfyyfsrdkkpwreaekfctsqgahla
svtsqeeqaflvqttssgdhwigltdqgtegiwrwvdgtpfnnaqskgfwgknqpdnwrh
rngeredcvhvrqqwndmacgssypwvckkstgwsaarvg

    Sequence, based on observed residues (ATOM records): (download) 
    >6jjjD (D:)
eavaaqkqeqktqnqvlqliaqnwkyfngnfyyfsrdkkpwreaekfctsqgahlasvts
qeeqaflvqttssgdhwigltdqgtegiwrwvdgtpfnnaqskgfwgknqpdnwrhrnge
redcvhvrqqwndmacgssypwvckkstgws

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6jjjE (E:)
galqeavaaqkqeqktqnqvlqliaqnwkyfngnfyyfsrdkkpwreaekfctsqgahla
svtsqeeqaflvqttssgdhwigltdqgtegiwrwvdgtpfnnaqskgfwgknqpdnwrh
rngeredcvhvrqqwndmacgssypwvckkstgwsaarvg

    Sequence, based on observed residues (ATOM records): (download) 
    >6jjjE (E:)
eavaaqkqeqktqnqvlqliaqnwkyfngnfyyfsrdkkpwreaekfctsqgahlasvts
qeeqaflvqttssgdhwigltdqgtegiwrwvdgtpfnnaqskgfwgknqpdnwrhrnge
redcvhvrqqwndmacgssypwvckkstgws

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6jjjF (F:)
galqeavaaqkqeqktqnqvlqliaqnwkyfngnfyyfsrdkkpwreaekfctsqgahla
svtsqeeqaflvqttssgdhwigltdqgtegiwrwvdgtpfnnaqskgfwgknqpdnwrh
rngeredcvhvrqqwndmacgssypwvckkstgwsaarvg

    Sequence, based on observed residues (ATOM records): (download) 
    >6jjjF (F:)
eavaaqkqeqktqnqvlqliaqnwkyfngnfyyfsrdkkpwreaekfctsqgahlasvts
qeeqaflvqttssgdhwigltdqgtegiwrwvdgtpfnnaqskgfwgknqpdnwrhrnge
redcvhvrqqwndmacgssypwvckkstgws