PDB entry 6hmw
View 6hmw on RCSB PDB site
Description: Cholera toxin classical B-pentamer in complex with fucose
Class: toxin
Keywords: Toxin, cholera toxin, lectin, complex, fucose, protein-carbohydrate interactions, X-ray crystal structure
Deposited on
2018-09-13, released
2019-08-14
The last revision prior to the SCOPe 2.07 freeze date was dated
2019-08-14, with a file datestamp of
2019-08-09.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: N/A
AEROSPACI score: 0.32
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: cholera enterotoxin B-subunit
Species: Vibrio cholerae [TaxId:666]
Gene: ctxB, C9J66_18955, EN12_07055, ERS013165_03981, ERS013197_06217, ERS013202_03762, ERS013206_03003
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d6hmwa_ - Chain 'B':
Compound: cholera enterotoxin B-subunit
Species: Vibrio cholerae [TaxId:666]
Gene: ctxB, C9J66_18955, EN12_07055, ERS013165_03981, ERS013197_06217, ERS013202_03762, ERS013206_03003
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d6hmwb_ - Chain 'C':
Compound: cholera enterotoxin B-subunit
Species: Vibrio cholerae [TaxId:666]
Gene: ctxB, C9J66_18955, EN12_07055, ERS013165_03981, ERS013197_06217, ERS013202_03762, ERS013206_03003
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d6hmwc_ - Chain 'D':
Compound: cholera enterotoxin B-subunit
Species: Vibrio cholerae [TaxId:666]
Gene: ctxB, C9J66_18955, EN12_07055, ERS013165_03981, ERS013197_06217, ERS013202_03762, ERS013206_03003
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d6hmwd_ - Chain 'E':
Compound: cholera enterotoxin B-subunit
Species: Vibrio cholerae [TaxId:666]
Gene: ctxB, C9J66_18955, EN12_07055, ERS013165_03981, ERS013197_06217, ERS013202_03762, ERS013206_03003
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d6hmwe_ - Chain 'F':
Compound: cholera enterotoxin B-subunit
Species: Vibrio cholerae [TaxId:666]
Gene: ctxB, C9J66_18955, EN12_07055, ERS013165_03981, ERS013197_06217, ERS013202_03762, ERS013206_03003
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d6hmwf_ - Chain 'G':
Compound: cholera enterotoxin B-subunit
Species: Vibrio cholerae [TaxId:666]
Gene: ctxB, C9J66_18955, EN12_07055, ERS013165_03981, ERS013197_06217, ERS013202_03762, ERS013206_03003
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d6hmwg_ - Chain 'H':
Compound: cholera enterotoxin B-subunit
Species: Vibrio cholerae [TaxId:666]
Gene: ctxB, C9J66_18955, EN12_07055, ERS013165_03981, ERS013197_06217, ERS013202_03762, ERS013206_03003
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d6hmwh_ - Chain 'I':
Compound: cholera enterotoxin B-subunit
Species: Vibrio cholerae [TaxId:666]
Gene: ctxB, C9J66_18955, EN12_07055, ERS013165_03981, ERS013197_06217, ERS013202_03762, ERS013206_03003
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d6hmwi_ - Chain 'J':
Compound: cholera enterotoxin B-subunit
Species: Vibrio cholerae [TaxId:666]
Gene: ctxB, C9J66_18955, EN12_07055, ERS013165_03981, ERS013197_06217, ERS013202_03762, ERS013206_03003
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d6hmwj_ - Heterogens: FUL, CA, BCN, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>6hmwA (A:)
tpqnitdlcaeyhntqihtlndkifsyteslagkremaiitfkngatfqvevpgsqhids
qkkaiermkdtlriaylteakveklcvwnnktphaiaaisman
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>6hmwB (B:)
tpqnitdlcaeyhntqihtlndkifsyteslagkremaiitfkngatfqvevpgsqhids
qkkaiermkdtlriaylteakveklcvwnnktphaiaaisman
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>6hmwC (C:)
tpqnitdlcaeyhntqihtlndkifsyteslagkremaiitfkngatfqvevpgsqhids
qkkaiermkdtlriaylteakveklcvwnnktphaiaaisman
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>6hmwD (D:)
tpqnitdlcaeyhntqihtlndkifsyteslagkremaiitfkngatfqvevpgsqhids
qkkaiermkdtlriaylteakveklcvwnnktphaiaaisman
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>6hmwE (E:)
tpqnitdlcaeyhntqihtlndkifsyteslagkremaiitfkngatfqvevpgsqhids
qkkaiermkdtlriaylteakveklcvwnnktphaiaaisman
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>6hmwF (F:)
tpqnitdlcaeyhntqihtlndkifsyteslagkremaiitfkngatfqvevpgsqhids
qkkaiermkdtlriaylteakveklcvwnnktphaiaaisman
- Chain 'G':
Sequence, based on SEQRES records: (download)
>6hmwG (G:)
tpqnitdlcaeyhntqihtlndkifsyteslagkremaiitfkngatfqvevpgsqhids
qkkaiermkdtlriaylteakveklcvwnnktphaiaaisman
Sequence, based on observed residues (ATOM records): (download)
>6hmwG (G:)
tpqnitdlcaeyhntqihtlndkifsyteslagkremaiitfkngatfqvevpgsqhids
qkkaiermkdtlriaylteakveklcvwnnktphaiaaisma
- Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)
>6hmwH (H:)
tpqnitdlcaeyhntqihtlndkifsyteslagkremaiitfkngatfqvevpgsqhids
qkkaiermkdtlriaylteakveklcvwnnktphaiaaisman
- Chain 'I':
Sequence; same for both SEQRES and ATOM records: (download)
>6hmwI (I:)
tpqnitdlcaeyhntqihtlndkifsyteslagkremaiitfkngatfqvevpgsqhids
qkkaiermkdtlriaylteakveklcvwnnktphaiaaisman
- Chain 'J':
Sequence; same for both SEQRES and ATOM records: (download)
>6hmwJ (J:)
tpqnitdlcaeyhntqihtlndkifsyteslagkremaiitfkngatfqvevpgsqhids
qkkaiermkdtlriaylteakveklcvwnnktphaiaaisman