PDB entry 6hjx
View 6hjx on RCSB PDB site
Description: X-ray structure of a pentameric ligand gated ion channel from Erwinia chrysanthemi (ELIC) 7'C pore mutant (L238C) in complex with nanobody 72
Class: membrane protein
Keywords: ion channel, pentameric ligand-gated ion channel, cya-loop receptor, MEMBRANE PROTEIN
Deposited on
2018-09-04, released
2019-10-09
The last revision prior to the SCOPe 2.08 freeze date was dated
2019-11-27, with a file datestamp of
2019-11-22.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.21
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: cys-loop ligand-gated ion channel
Species: Dickeya chrysanthemi [TaxId:556]
Database cross-references and differences (RAF-indexed):
- Uniprot P0C7B7 (0-305)
- insertion (155)
- engineered mutation (229)
- engineered mutation (291)
- engineered mutation (304)
- Chain 'B':
Compound: cys-loop ligand-gated ion channel
Species: Dickeya chrysanthemi [TaxId:556]
Database cross-references and differences (RAF-indexed):
- Uniprot P0C7B7 (2-308)
- expression tag (0-1)
- insertion (158)
- engineered mutation (232)
- conflict (283)
- engineered mutation (294)
- engineered mutation (307)
- Chain 'C':
Compound: cys-loop ligand-gated ion channel
Species: Dickeya chrysanthemi [TaxId:556]
Database cross-references and differences (RAF-indexed):
- Uniprot P0C7B7 (2-311)
- expression tag (0-1)
- insertion (158)
- engineered mutation (232)
- engineered mutation (294)
- engineered mutation (307)
- Chain 'D':
Compound: cys-loop ligand-gated ion channel
Species: Dickeya chrysanthemi [TaxId:556]
Database cross-references and differences (RAF-indexed):
- Uniprot P0C7B7 (0-309)
- insertion (155)
- engineered mutation (229)
- engineered mutation (291)
- engineered mutation (304)
- Chain 'E':
Compound: cys-loop ligand-gated ion channel
Species: Dickeya chrysanthemi [TaxId:556]
Database cross-references and differences (RAF-indexed):
- Uniprot P0C7B7 (0-306)
- insertion (156)
- engineered mutation (230)
- engineered mutation (292)
- engineered mutation (305)
- Chain 'F':
Compound: nanobody 72
Species: Lama glama [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6hjxf1, d6hjxf2 - Chain 'G':
Compound: nanobody 72
Species: Lama glama [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6hjxg1, d6hjxg2 - Chain 'H':
Compound: nanobody 72
Species: Lama glama [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6hjxh1, d6hjxh2 - Chain 'I':
Compound: nanobody 72
Species: Lama glama [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6hjxi1, d6hjxi2 - Chain 'J':
Compound: nanobody 72
Species: Lama glama [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6hjxj1, d6hjxj2 - Heterogens: PTY, P6G, LMT, MES, NA, HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
No sequence available.
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.
- Chain 'E':
No sequence available.
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>6hjxF (F:)
qvqlqesggglvqaggslrlscaasgrifstnvmgwfrqapgkerefvatvgriggstvy
adfvkgrftlsrdnaknmvylqmnslkpedtavyycgariggsdrlapenygywgqgtqv
tvss
- Chain 'G':
Sequence, based on SEQRES records: (download)
>6hjxG (G:)
qvqlqesggglvqaggslrlscaasgrifstnvmgwfrqapgkerefvatvgriggstvy
adfvkgrftlsrdnaknmvylqmnslkpedtavyycgariggsdrlapenygywgqgtqv
tvss
Sequence, based on observed residues (ATOM records): (download)
>6hjxG (G:)
qlqesggglvqaggslrlscaasgrifstnvmgwfrqapgkerefvatvgriggstvyad
fvkgrftlsrdnaknmvylqmnslkpedtavyycgariggsdrlapenygywgqgtqvtv
ss
- Chain 'H':
Sequence, based on SEQRES records: (download)
>6hjxH (H:)
qvqlqesggglvqaggslrlscaasgrifstnvmgwfrqapgkerefvatvgriggstvy
adfvkgrftlsrdnaknmvylqmnslkpedtavyycgariggsdrlapenygywgqgtqv
tvss
Sequence, based on observed residues (ATOM records): (download)
>6hjxH (H:)
vqlqesggglvqaggslrlscaasgrifstnvmgwfrqapgkerefvatvgriggstvya
dfvkgrftlsrdnaknmvylqmnslkpedtavyycgariggsdrlapenygywgqgtqvt
vs
- Chain 'I':
Sequence, based on SEQRES records: (download)
>6hjxI (I:)
qvqlqesggglvqaggslrlscaasgrifstnvmgwfrqapgkerefvatvgriggstvy
adfvkgrftlsrdnaknmvylqmnslkpedtavyycgariggsdrlapenygywgqgtqv
tvss
Sequence, based on observed residues (ATOM records): (download)
>6hjxI (I:)
qlqesggglvqaggslrlscaasgrifstnvmgwfrqapgkerefvatvgriggstvyad
fvkgrftlsrdnaknmvylqmnslkpedtavyycgariggsdrlapenygywgqgtqvtv
s
- Chain 'J':
Sequence; same for both SEQRES and ATOM records: (download)
>6hjxJ (J:)
qvqlqesggglvqaggslrlscaasgrifstnvmgwfrqapgkerefvatvgriggstvy
adfvkgrftlsrdnaknmvylqmnslkpedtavyycgariggsdrlapenygywgqgtqv
tvss