PDB entry 6h3u

View 6h3u on RCSB PDB site
Description: Schmallenberg Virus Glycoprotein Gc Head Domain in Complex with scFv 4B6
Class: viral protein
Keywords: Envelope Glycoprotein, scFv Antibody, VIRAL PROTEIN
Deposited on 2018-07-19, released 2019-02-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 3.17 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Envelopment polyprotein
    Species: Bovine Schmallenberg virus [TaxId:1318464]
    Gene: GP
    Database cross-references and differences (RAF-indexed):
    • Uniprot H2AM12 (Start-237)
      • expression tag (238-247)
  • Chain 'B':
    Compound: Envelopment polyprotein
    Species: Bovine Schmallenberg virus [TaxId:1318464]
    Gene: GP
    Database cross-references and differences (RAF-indexed):
    • Uniprot H2AM12 (Start-237)
      • expression tag (238-246)
  • Chain 'H':
    Compound: scFv 4B6 VH
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6H3U (0-End)
    Domains in SCOPe 2.08: d6h3uh_
  • Chain 'I':
    Compound: scFv 4B6 VH
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6H3U (0-End)
    Domains in SCOPe 2.08: d6h3ui_
  • Chain 'L':
    Compound: scFv 4B6 VL
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6H3U (0-End)
    Domains in SCOPe 2.08: d6h3ul1, d6h3ul2
  • Chain 'M':
    Compound: scFv 4B6 VL
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6H3U (0-End)
    Domains in SCOPe 2.08: d6h3um_

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6h3uH (H:)
qmqlqesgpglvkpsqslsltctvtgysitsdsawnwirqfpgnklewmgyisysgstsy
npslksrisitrdtsknqfflqlnsvttedtatyyctrwgdgyylywyfdvwgagttvtv
ssggggsggggsggggsggggg

    Sequence, based on observed residues (ATOM records): (download) 
    >6h3uH (H:)
qmqlqesgpglvkpsqslsltctvtgysitsdsawnwirqfpgnklewmgyisysgstsy
npslksrisitrdtsknqfflqlnsvttedtatyyctrwgdgyylywyfdvwgagttvtv
s

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >6h3uI (I:)
qmqlqesgpglvkpsqslsltctvtgysitsdsawnwirqfpgnklewmgyisysgstsy
npslksrisitrdtsknqfflqlnsvttedtatyyctrwgdgyylywyfdvwgagttvtv
ssggggsggggsggggsggggg

    Sequence, based on observed residues (ATOM records): (download) 
    >6h3uI (I:)
qmqlqesgpglvkpsqslsltctvtgysitsdsawnwirqfpgnklewmgyisysgstsy
npslksrisitrdtsknqfflqlnsvttedtatyyctrwgdgyylywyfdvwgagttvtv
ss

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >6h3uL (L:)
diqmtqttsslsaslgdrvtiscsasqgisyylnwyqqkpdgtvklliyytsslhsgvps
rfsgsgsgtdysltisnlepediatyycqqysklpwtfgggtkleikggwshpqfek

    Sequence, based on observed residues (ATOM records): (download) 
    >6h3uL (L:)
diqmtqttsslsaslgdrvtiscsasqgisyylnwyqqkpdgtvklliyytsslhsgvps
rfsgsgsgtdysltisnlepediatyycqqysklpwtfgggtkleikggwshp

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >6h3uM (M:)
diqmtqttsslsaslgdrvtiscsasqgisyylnwyqqkpdgtvklliyytsslhsgvps
rfsgsgsgtdysltisnlepediatyycqqysklpwtfgggtkleikggwshpqfek

    Sequence, based on observed residues (ATOM records): (download) 
    >6h3uM (M:)
diqmtqttsslsaslgdrvtiscsasqgisyylnwyqqkpdgtvklliyytsslhsgvps
rfsgsgsgtdysltisnlepediatyycqqysklpwtfgggtkleik