PDB entry 6gk4
View 6gk4 on RCSB PDB site
Description: Human NBD1 of CFTR in complex with nanobodies D12 and T8
Class: hydrolase
Keywords: Cystic Fibrosis, CFTR, nanobodies, thermal stabilization, conformational dynamics, Hydrolase
Deposited on
2018-05-18, released
2019-06-19
The last revision prior to the SCOPe 2.08 freeze date was dated
2019-08-21, with a file datestamp of
2019-08-16.
Experiment type: XRAY
Resolution: 2.91 Å
R-factor: N/A
AEROSPACI score: 0.14
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Cystic fibrosis transmembrane conductance regulator
Species: Homo sapiens [TaxId:9606]
Gene: CFTR
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6gk4a_ - Chain 'B':
Compound: Nanobody D12
Species: Lama glama [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6gk4b1, d6gk4b2 - Chain 'C':
Compound: Nanobody T8
Species: Lama glama [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6gk4c1, d6gk4c2 - Chain 'D':
Compound: Cystic fibrosis transmembrane conductance regulator
Species: Homo sapiens [TaxId:9606]
Gene: CFTR
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6gk4d_ - Chain 'E':
Compound: Nanobody D12
Species: Lama glama [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6gk4e1, d6gk4e2 - Chain 'F':
Compound: Nanobody T8
Species: Lama glama [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6gk4f1, d6gk4f2 - Heterogens: GOL, MG, ATP, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>6gk4A (A:)
sltttevvmenvtafweeggtpvlkdinfkiergqllavagstgagktsllmmimgelep
segkikhsgrisfcsqfswimpgtikeniifgvsydeyryrsvikacqleediskfaekd
nivlgeggitlsggqrarislaravykdadlylldspfgyldvltekeifescvcklman
ktrilvtskmehlkkadkililhegssyfygtfselqnlqpdfssklmg
Sequence, based on observed residues (ATOM records): (download)
>6gk4A (A:)
tevvmenvtafwpvlkdinfkiergqllavagstgagktsllmmimgelepsegkikhsg
risfcsqfswimpgtikeniifgvsydeyryrsvikacqleediskfaekdnivlgeggi
tlsggqrarislaravykdadlylldspfgyldvltekeifescvcklmanktrilvtsk
mehlkkadkililhegssyfygtfselqnl
- Chain 'B':
Sequence, based on SEQRES records: (download)
>6gk4B (B:)
qvqlqesggglvqagsslrlacaatgsirsinnmgwyrqapgkqrgmvaiitrvgntdya
dsvkgrftisrdnakntvylqmnslkpedtatyychaeiteqsrpfyltddywgqgtqvt
vssaaahhhhhhgaaeqkliseedlngaa
Sequence, based on observed residues (ATOM records): (download)
>6gk4B (B:)
qvqlqesggglvqagsslrlacaatgsirsinnmgwyrqapgkqrgmvaiitrvgntdya
dsvkgrftisrdnakntvylqmnslkpedtatyychaeiteqsrpfyltddywgqgtqvt
v
- Chain 'C':
Sequence, based on SEQRES records: (download)
>6gk4C (C:)
qvqlqesggglvqpggslrlscaasgstssinamgwyrqapgkqrepvaisssggdtrya
epvkgrftisrdnaqnkvylqmnslkpedtavyycwlnwgrtsvnswgqgtqvtvssaaa
hhhhhhgaaeqkliseedlngaa
Sequence, based on observed residues (ATOM records): (download)
>6gk4C (C:)
qvqlqesggglvqpggslrlscaassinamgwyrqapgkqrepvaisssggdtryaepvk
grftisrdnaqnkvylqmnslkpedtavyycwlnwgrtsvnswgqgtqvtvssa
- Chain 'D':
Sequence, based on SEQRES records: (download)
>6gk4D (D:)
sltttevvmenvtafweeggtpvlkdinfkiergqllavagstgagktsllmmimgelep
segkikhsgrisfcsqfswimpgtikeniifgvsydeyryrsvikacqleediskfaekd
nivlgeggitlsggqrarislaravykdadlylldspfgyldvltekeifescvcklman
ktrilvtskmehlkkadkililhegssyfygtfselqnlqpdfssklmg
Sequence, based on observed residues (ATOM records): (download)
>6gk4D (D:)
ttevvmenvtafwpvlkdinfkiergqllavagstgagktsllmmimgelepsegkikhs
grisfcsqfswimpgtikeniifgvsydeyryrsvikacqleediskfaekdnivlgegg
itlsggqrarislaravykdadlylldspfgyldvltekeifescvcklmanktrilvts
kmehlkkadkililhegssyfygtfselqnl
- Chain 'E':
Sequence, based on SEQRES records: (download)
>6gk4E (E:)
qvqlqesggglvqagsslrlacaatgsirsinnmgwyrqapgkqrgmvaiitrvgntdya
dsvkgrftisrdnakntvylqmnslkpedtatyychaeiteqsrpfyltddywgqgtqvt
vssaaahhhhhhgaaeqkliseedlngaa
Sequence, based on observed residues (ATOM records): (download)
>6gk4E (E:)
qvqlqesggglvqagsslrlacaatgsirsinnmgwyrqapgkqrgmvaiitrvgntdya
dsvkgrftisrdnakntvylqmnslkpedtatyychaeiteqsrpfyltddywgqgtqvt
vs
- Chain 'F':
Sequence, based on SEQRES records: (download)
>6gk4F (F:)
qvqlqesggglvqpggslrlscaasgstssinamgwyrqapgkqrepvaisssggdtrya
epvkgrftisrdnaqnkvylqmnslkpedtavyycwlnwgrtsvnswgqgtqvtvssaaa
hhhhhhgaaeqkliseedlngaa
Sequence, based on observed residues (ATOM records): (download)
>6gk4F (F:)
qvqlqesggglvqpggslrlscaassinamgwyrqapgkqrepvaisssggdtryaepvk
grftisrdnaqnkvylqmnslkpedtavyycwlnwgrtsvnswgqgtqvtvssaaa