PDB entry 6f4w

View 6f4w on RCSB PDB site
Description: Crystal structure of H. pylori purine nucleoside phosphorylase in complex with formycin A
Class: hydrolase
Keywords: Purine nucleoside phosphorylase, H. pylori, formycin A, HYDROLASE
Deposited on 2017-11-30, released 2018-02-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-04-25, with a file datestamp of 2018-04-20.
Experiment type: XRAY
Resolution: 2.29 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Helicobacter pylori [TaxId:210]
    Gene: deoD, HP_1178
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6f4wa_
  • Chain 'B':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Helicobacter pylori [TaxId:210]
    Gene: deoD, HP_1178
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6f4wb_
  • Chain 'C':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Helicobacter pylori [TaxId:210]
    Gene: deoD, HP_1178
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6f4wc_
  • Chain 'D':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Helicobacter pylori [TaxId:210]
    Gene: deoD, HP_1178
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6f4wd_
  • Chain 'E':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Helicobacter pylori [TaxId:210]
    Gene: deoD, HP_1178
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6f4we_
  • Chain 'F':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Helicobacter pylori [TaxId:210]
    Gene: deoD, HP_1178
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6f4wf_
  • Heterogens: FMC, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6f4wA (A:)
mtphinakigdfypqcllcgdplrvsyiakkflqdakeitnvrnmlgfsgkykgrgislm
ghgmgiasctiyvteliktyqvkellrigtcgaispkvglkdiimatgastdsktnrvrf
lnhdlsatpdfelslrayqtakrlgidlkvgnvfssdffysfethafdlmakynhlaiem
eaaglyatamelnakalclcsvsdhlitkealspkervesfdnmiilalemms

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6f4wB (B:)
mtphinakigdfypqcllcgdplrvsyiakkflqdakeitnvrnmlgfsgkykgrgislm
ghgmgiasctiyvteliktyqvkellrigtcgaispkvglkdiimatgastdsktnrvrf
lnhdlsatpdfelslrayqtakrlgidlkvgnvfssdffysfethafdlmakynhlaiem
eaaglyatamelnakalclcsvsdhlitkealspkervesfdnmiilalemms

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6f4wC (C:)
mtphinakigdfypqcllcgdplrvsyiakkflqdakeitnvrnmlgfsgkykgrgislm
ghgmgiasctiyvteliktyqvkellrigtcgaispkvglkdiimatgastdsktnrvrf
lnhdlsatpdfelslrayqtakrlgidlkvgnvfssdffysfethafdlmakynhlaiem
eaaglyatamelnakalclcsvsdhlitkealspkervesfdnmiilalemms

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6f4wD (D:)
mtphinakigdfypqcllcgdplrvsyiakkflqdakeitnvrnmlgfsgkykgrgislm
ghgmgiasctiyvteliktyqvkellrigtcgaispkvglkdiimatgastdsktnrvrf
lnhdlsatpdfelslrayqtakrlgidlkvgnvfssdffysfethafdlmakynhlaiem
eaaglyatamelnakalclcsvsdhlitkealspkervesfdnmiilalemms

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6f4wE (E:)
mtphinakigdfypqcllcgdplrvsyiakkflqdakeitnvrnmlgfsgkykgrgislm
ghgmgiasctiyvteliktyqvkellrigtcgaispkvglkdiimatgastdsktnrvrf
lnhdlsatpdfelslrayqtakrlgidlkvgnvfssdffysfethafdlmakynhlaiem
eaaglyatamelnakalclcsvsdhlitkealspkervesfdnmiilalemms

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6f4wF (F:)
mtphinakigdfypqcllcgdplrvsyiakkflqdakeitnvrnmlgfsgkykgrgislm
ghgmgiasctiyvteliktyqvkellrigtcgaispkvglkdiimatgastdsktnrvrf
lnhdlsatpdfelslrayqtakrlgidlkvgnvfssdffysfethafdlmakynhlaiem
eaaglyatamelnakalclcsvsdhlitkealspkervesfdnmiilalemms