PDB entry 6d4p
View 6d4p on RCSB PDB site
Description: Ube2D1 in complex with ubiquitin variant Ubv.D1.1
Class: transferase
Keywords: Ubiquitin, Ubiquitin conjugating enzyme, Ubiquitin variant, TRANSFERASE
Deposited on
2018-04-18, released
2019-07-17
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-03-11, with a file datestamp of
2020-03-06.
Experiment type: XRAY
Resolution: 2.11 Å
R-factor: N/A
AEROSPACI score: 0.29
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: ubiquitin-conjugating enzyme e2 d1
Species: Homo sapiens [TaxId:9606]
Gene: UBE2D1, SFT, UBC5A, UBCH5, UBCH5A
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6d4pa1, d6d4pa2 - Chain 'C':
Compound: Ubiquitin Variant Ubv.D1.1
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot Q59EM9 (12-End)
- expression tag (10-11)
- engineered mutation (18-20)
- engineered mutation (75-76)
- engineered mutation (79)
- engineered mutation (81-83)
Domains in SCOPe 2.08: d6d4pc1, d6d4pc2 - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>6d4pA (A:)
gamalkriqkelsdlqrdppahcsagpvgddlfhwqatimgppdsayqggvffltvhfpt
dypfkppkiafttkiyhpninsngsicldilrsqwspaltvskvllsicsllcdpnpddp
lvpdiaqiyksdkekynrharewtqkyam
- Chain 'C':
Sequence, based on SEQRES records: (download)
>6d4pC (C:)
gaggdykddddkmqifvkkfwgktitlevepsdtienvkakiqdkegippdqqrlifagk
qledgrtlsdyniqkkftlylayglrag
Sequence, based on observed residues (ATOM records): (download)
>6d4pC (C:)
dkmqifvkkfwgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkkftlylayg