PDB entry 6cv5

View 6cv5 on RCSB PDB site
Description: CryoEM structure of human enterovirus D68 full particle (after incubation with low molecular weight heparin)
Class: virus
Keywords: virus, genome release, receptor
Deposited on 2018-03-27, released 2019-07-24
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: EM
Resolution: 2.79 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: viral protein 1
    Species: Enterovirus D68 [TaxId:42789]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6cv5a_
  • Chain 'B':
    Compound: viral protein 3
    Species: Enterovirus D68 [TaxId:42789]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6cv5b_
  • Chain 'C':
    Compound: viral protein 2
    Species: Enterovirus D68 [TaxId:42789]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: viral protein 4
    Species: Enterovirus D68 [TaxId:42789]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6cv5A (A:)
iesiiktatdtvkseinaelgvvpslnavetgatsntepeeaiqtrtvinqhgvsetlve
nflsraalvskrsfeykdhtssaaqtdknffkwtintrsfvqlrrklelftylrfdaeit
ilttvavngssnntymglpnltlqamfvptgaltpekqdsfhwqsgsnasvffkisdppa
rmtipfmcinsaysvfydgfagfeksglyginpadtignlcvrivnehqpvgftvtvrvy
mkpkhikawaprpprtlpymsiananykgkkrapnalnaiignrdsvktmphnivtt

    Sequence, based on observed residues (ATOM records): (download) 
    >6cv5A (A:)
iesiiktatdtvkseinaelgvvpslnavetgatsntepeeaiqtrtvinqhgvsetlve
nflsraalvskrsfeykdhtssaaqtdknffkwtintrsfvqlrrklelftylrfdaeit
ilttvavntymglpnltlqamfvptgaltpekqdsfhwqsgsnasvffkisdpparmtip
fmcinsaysvfydgfagfeksglyginpadtignlcvrivnehqpvgftvtvrvymkpkh
ikawaprpprtlpymsiananykgkkrapnalnaiignrdsvktmphniv

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6cv5B (B:)
gvptyllpgsgqflttddhssapvlpcfnptpemhipgqvrnmlevvqvesmmeinntes
avgmerlkvdisaltdvdqllfnipldiqldgplrntlvgnisryythwsgslemtfmfc
gsfmatgklilcytppggscpttretamlgthivwdfglqssvtliipwisgshyrmfnn
dakstnanvgyvtcfmqtnlivpsessdtcsligfiaakddfslrlmrdspdigqidhlh
aaeaayq

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.